vanmooylipidomics LOBSTAHS issues

vanmooylipidomics / LOBSTAHS

Git repository for the R package "LOBSTAHS" (Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences)

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issues

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Problem with 'num.treatments' in XCMS3 generated

#34 hholm closed 3 years ago
0
Transfer formal Bioconductor ownership/maintainer responsibilities to @hholm

#33 jamesrco closed 3 years ago
1
Fix multiple issues with recent commits

#32 jamesrco closed 3 years ago
1
LOBSTAHS migration w/pending change of object classes in XCMS3

#31 jamesrco closed 3 years ago
4
Addition of PA and LPA to LOBdb

#30 j-e-hunter closed 7 years ago
1
Bring LOBSTAHS repo into alignment with Bioc Git server

#29 jamesrco closed 7 years ago
2
"Auto-detect" LOBdbase object in doLOBscreen() call when it is embedded within a list

#28 jamesrco closed 7 years ago
1
Error: "Input 'database' is not a 'LOBdbase' object..."

#27 jamesrco closed 7 years ago
1
Error when calling generateLOBdbase(): "Error in FUN(X[[i]], ...): only defined on a data frame with all numeric variables"

#26 jamesrco closed 7 years ago
2
Create some basic unit tests

#25 jamesrco opened 7 years ago
0
Add guide to confidence code interpretation to vignette or Wiki

#24 jamesrco opened 7 years ago
0
Parallelization of doLOBscreen call to core screenPSpectrum function

#23 jamesrco opened 7 years ago
0
excludeoddFAlength, IP_MAG class

#22 j-e-hunter closed 3 years ago
9
Accidental install from old bioclite repo.

#21 j-e-hunter opened 7 years ago
4
LOBDBase Expansion

#20 j-e-hunter closed 7 years ago
13
Addition of Lyso-DAGs, DAG-OH and MAG-OH lipids to database.

#19 j-e-hunter closed 7 years ago
5
Ignore "empty" lines of csv data when reading user-supplied input tables

#18 jamesrco opened 7 years ago
0
Creating a custom database

#17 MarcNIOZ closed 7 years ago
18
more readable case-insensitive regexes

#16 joefutrelle opened 7 years ago
0
port remaining for loops to R apply family of functions

#15 joefutrelle opened 7 years ago
0
Implement new argument to allow user to specify how large the retention time window tolerance should be

#14 joefutrelle opened 7 years ago
0
Implement ability to run LOBSTAHS on ms data objects other than a CAMERA xsannotate object (with embedded xcmsSet)

#13 joefutrelle opened 7 years ago
0
Add new argument to doLOBscreen function which will allow users to retain rejected/unidentified features

#12 joefutrelle closed 7 years ago
2
Automated merging of LOBSTAHS ID’s in + and - ionization mode for added level of confidence

#11 joefutrelle opened 7 years ago
0
ms2 screening

#10 joefutrelle opened 7 years ago
1
allow caller to specify pathname of CSV file in getLOBpeaklist

#9 joefutrelle opened 7 years ago
0
Addition of PDMS contaminant series to database

#8 j-e-hunter closed 7 years ago
0
Error when attempting to export a LOBSet using getLOBpeaklist()

#7 jamesrco closed 7 years ago
1
Error object 'num_compounds.this_species' not found when generating custom database

#6 jamesrco closed 7 years ago
3
Pulling in new DB generation functionality for additional lipid classes (from Jon)

#5 jamesrco closed 7 years ago
0
Issues #2 and #3

#4 ricoderks closed 8 years ago
0
Error screening based on retention time

#3 ricoderks closed 8 years ago
1
Error in doLOBscreen

#2 ricoderks closed 8 years ago
0
new lipid class in db

#1 ricoderks closed 8 years ago
5