vanvalenlab deepcell-tracking issues

vanvalenlab / deepcell-tracking

Track cells and build cell lineages

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issues

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Update version for 0.5.0 pre-relase

#75 willgraf closed 3 years ago
0
Drop support for Python 3.5

#74 willgraf closed 3 years ago
0
Improve error handling for `relabel_sequential_lineage` and `is_valid_lineage`

#73 willgraf closed 3 years ago
0
`is_valid_lineage` does not look at `y` and can report `True` for invalid lineages.

#72 willgraf closed 3 years ago
0
`CellTracker.track_cells` crashes if there is a frame with no objects.

#71 willgraf opened 3 years ago
1
`is_valid_lineage` should check if the daughter ID is valid.

#70 willgraf closed 3 years ago
0
Bump version to 0.4.4

#69 willgraf closed 3 years ago
0
Support saving and loading trk/trks data to/from `BytesIO`

#68 msschwartz21 closed 3 years ago
2
Change `isbi_utils` from writing files to comparing in memory

#67 R-Ding closed 3 years ago
3
Cache the entire Python environment to speed up build times.

#66 willgraf closed 3 years ago
1
Migrate `.trk` files from .tar files to .zip files.

#65 willgraf opened 3 years ago
0
Compress `.trks` by using gzip compression when writing the tarfile.

#64 willgraf closed 3 years ago
1
Compress `.trks` by using `gzip` compression when writing the tarfile.

#63 willgraf closed 3 years ago
1
Compress `.trks` by saving data using compressed `.npz` files.

#62 willgraf closed 3 years ago
2
Support Python 3.9

#61 willgraf closed 3 years ago
0
Bump deepcell-toolbox to 0.10.x

#60 willgraf closed 3 years ago
0
Create release-drafter workflow to draft releases automatically.

#59 willgraf closed 3 years ago
1
Update version to 0.4.0

#58 willgraf closed 3 years ago
0
Change shape of feature arrays to use time as the first axis.

#57 willgraf closed 3 years ago
1
Add concat_tracks utility function

#56 willgraf closed 3 years ago
0
Pull code from `Track` object into helper functions with tests.

#55 willgraf closed 3 years ago
0
Refactor tracking.py to remove unused code and improve readability.

#54 willgraf closed 3 years ago
0
Update Tracking Approach and Address Outstanding Bugs

#53 MekWarrior closed 3 years ago
3
Fix predictions-slicing useing idx_to_id in _get_parent.

#52 willgraf closed 3 years ago
0
Validate lineage.json data

#51 willgraf opened 3 years ago
4
Weird gap filling behavior when applying the model

#50 Jeff-Gui opened 3 years ago
0
Fix PyPI version badge URL.

#49 willgraf closed 3 years ago
0
Remove scikit-image version restriction.

#48 willgraf closed 3 years ago
0
Randomness in tests cause fluctuations in coverage.

#47 willgraf opened 3 years ago
1
Only run Coveralls if COVERALLS_REPO_TOKEN is set.

#46 willgraf closed 3 years ago
0
Testing conditional Coveralls

#45 willgraf closed 3 years ago
0
Split PyTest and Coveralls into separate steps.

#44 willgraf closed 3 years ago
0
Use each coveralls key with os and python versions.

#43 willgraf closed 3 years ago
0
transform dtype early

#42 Jeff-Gui closed 3 years ago
1
Use tmpdir test fixture instead of NamedTemporaryFile for Windows compatibility.

#41 willgraf closed 3 years ago
0
Run tests against each OS version.

#40 willgraf closed 3 years ago
0
Use environment markers in setup.py to conditionally change opencv versions

#39 willgraf closed 3 years ago
0
What is valid labeling of mask input?

#37 Jeff-Gui closed 3 years ago
6
Bump version to 0.3.0

#36 willgraf closed 3 years ago
0
Tracking object does not correctly skip empty frames

#35 MekWarrior closed 3 years ago
1
Update predict calls to match changes for TF2 Migration

#34 MekWarrior closed 3 years ago
0
Use headless builds of OpenCV

#33 willgraf closed 3 years ago
0
Migrate CI/CD from TravisCI to GitHub Actions

#32 willgraf closed 3 years ago
0
Pin OpenCV <= 3.4.9.31 for better Python distribution support.

#31 willgraf closed 4 years ago
0
Update "lineage" key to "lineages" in README.

#30 willgraf closed 4 years ago
0
Update README

#29 MekWarrior closed 4 years ago
0
Images must be normalized prior to use in the cell tracker

#28 vanvalen closed 4 years ago
2
Key value in readme is wrong

#27 vanvalen closed 4 years ago
0
PEP8 setup.py and improve code coverage.

#26 willgraf closed 4 years ago
0

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