vaquerizaslab tadtool issues

vaquerizaslab / tadtool

TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.

MIT License

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issues

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Can't use window_sizes in tadtool plot

#29 Ziwei-Liu opened 6 months ago
0
TypeError: Dimensions of C (100, 50) are incompatible with X (51) and/or Y (100); see help(pcolormesh)

#28 pna059 opened 2 years ago
8
python functionality broken

#27 benayang closed 2 years ago
4
Using .hic/.cool files

#26 aminakur opened 3 years ago
2
Sugget to add python2.7 to documentation

#25 qiyubio opened 3 years ago
5
Don't understand windows_size parameter in tadtool tad

#24 rachelzhu123 opened 3 years ago
2
ImportError: Cannot load backend 'TKAgg' which requires the 'tk' interactive framework, as 'headless' is currently running

#23 YuZhang337 opened 4 years ago
2
Is it possible to output insulation index?

#22 rikrdo89 opened 5 years ago
1
Range of bins in bed file needs to exactly match all bins in matrix

#21 rikrdo89 opened 5 years ago
5
Raw or Iced matrices as input?

#20 rikrdo89 closed 5 years ago
2
Regions must be the same length as rows in matrix!

#19 hzaumsq closed 5 years ago
7
IS values differences

#18 LeonardoLed closed 5 years ago
4
Index out of bounds for axis

#17 jennifm closed 6 years ago
4
Tadtool tads stops after processing one chromosome

#16 MatStz closed 6 years ago
4
bug when install tadtool

#15 zyxplus closed 6 years ago
1
Values IS in command "tads"

#14 LeonardoLed closed 6 years ago
1
Limitations of using software？

#13 RuiqinZheng closed 6 years ago
1
Error in plot

#12 RuiqinZheng closed 6 years ago
1
Error in Matplotlib in TADtool

#11 LeonardoLed closed 6 years ago
2
TADTool in Genome wide study

#10 LeonardoLed closed 6 years ago
2
Problem with the format HiC matrix generated by HicPro

#9 LeonardoLed closed 6 years ago
2
BED file should be 0-based, but examples here are 1-based

#8 hansiu closed 7 years ago
1
Errors on 6-column bed file

#7 liz-is closed 7 years ago
1
tadtool not loading automatically

#6 farshadf closed 7 years ago
1
Unable to get output for my own data

#5 mthimma closed 8 years ago
14
Minor issue with progress bar

#4 Krannich479 closed 8 years ago
2
Unable to run example data on Ubuntu

#3 mthimma closed 8 years ago
21
tkinter.TclError: nodisplay name and no $DISPLAY environment variable

#2 lwtan90 closed 8 years ago
2
tads command only produces output for one chromosome

#1 gangxuehzau closed 8 years ago
4