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vatlab
/
varianttools
software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
https://vatlab.github.io/vat-docs/
GNU General Public License v3.0
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ERROR: string index out of range
#110
freedomq8
closed
5 years ago
13
KING ERROR: Failed to execute step king_41: /KING-pc.ped does not exist
#109
freedomq8
closed
5 years ago
3
conda 3.0.3 release
#108
BoPeng
closed
5 years ago
1
KING ERROR: Segmentation fault (core dumped) (return code 139).
#107
freedomq8
closed
5 years ago
6
--from_stat vtools 3.0.2 for Python 3.7.3
#106
freedomq8
closed
5 years ago
11
Finding more information on excluded variants
#105
BoPeng
opened
5 years ago
6
Problem in creating a new annotation database dbNSFP v3_5a for hg19
#104
mullinyu
opened
5 years ago
13
Cannot add DP to variant fields
#103
brankovicmarija
opened
5 years ago
8
How to show samples with heterogyzous genotype?
#102
mullinyu
closed
5 years ago
2
V3.0.3
#101
jma7
closed
5 years ago
0
Release variant tools on bioconda
#100
BoPeng
closed
5 years ago
1
Size of genotype database
#99
gaow
opened
5 years ago
2
Organization of genotype database
#98
gaow
opened
5 years ago
0
Some benchmarks SQLite vs HDF5
#97
gaow
closed
5 years ago
5
Missing `ANNOVAR` and `KING` pipelines
#96
gaow
closed
5 years ago
5
SKAT errors from the new version
#95
BoPeng
opened
5 years ago
19
Index out of range error after expanding snapshot
#94
BoPeng
closed
5 years ago
5
Error: Cannot find reference genome for build hg19 when importing vcf file to new project
#93
mullinyu
closed
5 years ago
14
quick start guide step 3
#92
git-jemiller
closed
4 years ago
2
vtools associate qualtitative phenotypes
#91
fabiennejh
opened
5 years ago
8
Error message too verbose by default
#90
gaow
opened
5 years ago
1
Need help with variant tools association test
#89
BoPeng
closed
5 years ago
2
Dockerized variant tools fails to run SKAT association test
#88
kromanenkov
closed
5 years ago
10
Number of tested variants varies depending the statistical test
#87
PedroBarbosa
closed
5 years ago
2
vtools import reduces the number of variants
#86
PedroBarbosa
closed
4 years ago
3
Vtools init - ERROR: disk I/O error
#85
Jammcgro123
closed
4 years ago
6
ERROR: 'ascii' codec can't encode characters in position 115-116: ordinal not in range(128)
#84
freedomq8
closed
4 years ago
5
Can association test use genomad maf file as background?
#83
yipukangda
opened
6 years ago
1
vtools export command in v3
#82
jma7
opened
6 years ago
0
Need to port `vtools init`
#81
gaow
opened
6 years ago
0
Conda release of vtools 3.0 beta
#80
BoPeng
closed
5 years ago
3
Slow `vtools show genotype`
#79
gaow
closed
5 years ago
21
vtools show snapshot fails.
#78
BoPeng
closed
6 years ago
1
Remove src/variant_tools/io_vcf_read.c from repo
#77
BoPeng
closed
6 years ago
0
Error when install master branch in conda with python 2.7
#76
jma7
closed
6 years ago
2
Error message using RTest
#75
fabiennejh
opened
6 years ago
3
Consider using updated annotation files for the documentation.
#74
jma7
closed
6 years ago
0
Documentation: Show
#73
jma7
closed
6 years ago
0
Documentation: Phenotype
#72
jma7
closed
6 years ago
1
Update documentation and test cases where genoinfo such as DP is imported as var_info
#71
jma7
closed
6 years ago
0
Documentation: Update
#70
jma7
closed
6 years ago
1
Documentation: Update
#69
junma80
closed
6 years ago
0
Documentation: merge subjects
#68
BingLi17
closed
6 years ago
0
Documentation: Import
#67
jma7
closed
6 years ago
5
Quick Start Guide
#66
jma7
closed
6 years ago
2
Some typos in the vtools documentation
#65
BingLi17
closed
6 years ago
2
Install variantTools from main branch, when run "vtools" got error message.
#64
BingLi17
closed
6 years ago
3
Importing individual samples without 0/0 GT
#63
kromanenkov
closed
6 years ago
3
Error in simulation in model resample
#62
Song1201
opened
6 years ago
11
Can not run simulations in Peng2014_ex1
#61
BoPeng
closed
6 years ago
3
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