vcflib bio-vcf issues - Githubissues

vcflib / bio-vcf

Smart VCF parser DSL

MIT License

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issues

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No output for Statistics

#53 wolfevolution opened 2 weeks ago
0
Genotype assignment after splitting multiallelic variant sites into biallelic sites

#52 HaesuKo opened 1 year ago
0
Added vcffile.rb to general requires

#51 seoanezonjic opened 2 years ago
1
how to convert vcf to tab-sep file?

#50 xiucz closed 3 years ago
2
Debian package for bio-vcf

#49 pjotrp closed 3 years ago
2
Version 0.9.3 missing BioVcf::VCFfile

#48 delongGao opened 4 years ago
3
Vcffile

#47 homonecloco closed 6 years ago
0
Adding mongo version specific commands

#46 jdeligt closed 7 years ago
0
Fixing template

#45 jdeligt closed 7 years ago
0
Possible fix of the issue 33 (Final JSON record has extraneous comma)

#44 uazadi closed 3 years ago
2
Typo correction

#43 prasunanand closed 8 years ago
0
Fix handling of VCF file with no records (only header)

#42 gusevfe closed 8 years ago
0
Nil error can show missing value

#41 pjotrp opened 8 years ago
0
Treat "./." genotype as valid

#40 pjotrp opened 8 years ago
1
Update vcfsample.rb

#39 homonecloco closed 8 years ago
0
Validate empty samples when it is a single dot

#38 homonecloco closed 8 years ago
1
Small value for thread-lines may reorder output

#37 pjotrp opened 8 years ago
0
Crashes in cleanup_tmpdir near the end of a run

#36 brettcs closed 8 years ago
2
Improve nil handling of values

#35 pjotrp opened 8 years ago
0
INFO rewrite requires an entry in the header

#34 gusevfe opened 8 years ago
0
Final JSON record has extraneous comma

#33 pjotrp closed 3 years ago
2
Soft filter: over-write filter if previously PASS

#32 chapmanb closed 8 years ago
2
Change delimiter for lists

#31 mjafin opened 9 years ago
14
VCF soft filters

#30 chapmanb closed 8 years ago
5
Fix extracting INFO fields when one is suffix of another

#29 gusevfe closed 9 years ago
1
Remove the date from the command line flags from the header

#28 pjotrp closed 9 years ago
2
v0.8 series slower than v0.7 series

#27 pjotrp closed 9 years ago
2
Multi-core and zcat

#26 pjotrp closed 9 years ago
2
RDF output gets garbled on fast machines

#25 pjotrp closed 9 years ago
2
Make vcf2json examples output valid json

#24 rernst closed 9 years ago
0
Fix issues with phased genotypes

#23 gusevfe closed 10 years ago
1
Fix gts for phased genotypes

#22 gusevfe closed 10 years ago
0
Allow template to inject a header

#21 pjotrp closed 9 years ago
1
Generate new VCF file using templates

#20 pjotrp closed 9 years ago
1
Merge VCF files

#19 pjotrp closed 8 years ago
1
Add sample rewrite (and remove)

#18 pjotrp closed 8 years ago
1
STDIN in separate thread

#17 pjotrp closed 9 years ago
1
Potential deadlock with multi threads & crashes in children

#16 glennsb closed 10 years ago
3
Removes clone of lines array before fork()

#15 glennsb closed 10 years ago
1
Add gunzip support for VCF files

#14 pjotrp closed 9 years ago
2
Use regex for sample names

#13 pjotrp opened 10 years ago
1
Use popen for thread communication

#12 pjotrp closed 10 years ago
2
Header INFO field editing

#11 pjotrp closed 9 years ago
1
Handle STDOUT in separate thread

#10 pjotrp closed 10 years ago
1
Move tmp files to tmpdir

#9 pjotrp closed 10 years ago
0
Add more descriptive error for empty fields

#8 pjotrp closed 10 years ago
1
Add information on run

#7 pjotrp closed 10 years ago
1
Problem using gti in named sample

#6 pjotrp closed 10 years ago
1
Check for sample

#5 pjotrp closed 10 years ago
2
Ignore (eval) errors

#4 pjotrp closed 10 years ago
1