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hyphy
HyPhy: Hypothesis testing using Phylogenies
http://www.hyphy.org
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v 2.5.41
#1504
spond
closed
2 years ago
0
Fails when OpenMP isn't enabled
#1503
yurivict
closed
2 years ago
3
Re-estimating Branch Lengths in HyPhy and using a BS-REL Model
#1502
amholtz
closed
2 years ago
5
Initialization phase does not getting over
#1501
Monikasharma1494
closed
2 years ago
2
Can't seem to get over initialization phase for Analysis
#1500
Leki-10
closed
2 years ago
4
busted-mh using single and multiple species as foreground
#1499
MariangelaIannello
closed
2 years ago
2
How to fix the topology and branch lengthes of my input tree when estimating other parameters using RELAX
#1498
biozhajie
closed
2 years ago
5
How to use the k values in the table of Branch attributes at the bottom of the json output file
#1497
biozhajie
closed
2 years ago
4
what is difference between selecting one ancestral branch and selecting ancestral branch and all descendent branches
#1496
jzhan6
closed
2 years ago
4
Would you mind show me how to assign each k value to each branch of a tree
#1495
biozhajie
closed
2 years ago
0
How to assign each k value outputed by general descriptive model in RELAX program, to each branch of a tree
#1494
biozhajie
closed
2 years ago
0
Develop
#1493
spond
closed
2 years ago
2
What can be the most reliable parameters for running GARD method for our sample?
#1492
Clementine0702
closed
2 years ago
4
Beginner question on Fst compartmentalization
#1491
Beantha
closed
2 years ago
6
arguments for GARD method
#1490
ShiCenNCSU
closed
2 years ago
3
effect of gaps and multiple nucleotide substitutions
#1489
Suirotras
closed
2 years ago
3
DataMonkey is not working?
#1488
laurasolartemurillo
closed
2 years ago
3
Usage of foreground and background branches
#1487
Suirotras
closed
2 years ago
2
Cannot run MEME test with my own tree
#1486
zhaoyih8
closed
2 years ago
2
Interpreting BUSTED-PHenotype analysis
#1485
francicco
closed
2 years ago
3
aBSREL: species trees or gene trees?
#1484
Emilyaoc
closed
2 years ago
2
Interpreting RELAX results
#1483
mbarkdull
closed
2 years ago
3
Issues with files
#1482
cms2775
closed
2 years ago
3
BUSTED fixes
#1481
spond
closed
2 years ago
1
Which module of should we use for calculation.
#1480
ld9866
closed
2 years ago
5
v.2.5.39
#1479
spond
closed
2 years ago
1
Dev bsrel
#1478
spond
closed
2 years ago
1
Which module of this software we should use for calculation.
#1477
ld9866
closed
2 years ago
7
LHS after aBSREL analysis
#1476
tamelgarejo
closed
2 years ago
4
Phylogenetic tree file for BGM from command line
#1475
DrewBarratt
closed
2 years ago
3
Issue running BUSTED
#1474
xing-he529
closed
2 years ago
2
BIG PROBLEM ADMIN!
#1473
noor3468
closed
2 years ago
8
What's the difference between two dN/dS ratios in "Obtaining the global omega" and "Improving branch lengths"?
#1472
xuechunxu
closed
2 years ago
2
Issues with viewing json files
#1471
gshreyaa
closed
2 years ago
9
Datamonkey: Cannot read property 'on' of undefined
#1470
saoirseguita
closed
2 years ago
3
2.5.38
#1469
spond
closed
2 years ago
0
RELAX
#1468
jk3005
closed
2 years ago
4
Simple beginner question
#1467
schultzt23
closed
2 years ago
34
The number of tree tips in 'HjHeWosw.tree_0'(3501) is not equal to the number of sequences in the data filter associated with the tree (494).
#1466
NickShanyt
closed
2 years ago
4
FEL results not displaying
#1465
cherylichihara
closed
2 years ago
2
SLAC：The results of the Markdown file "......sites are significant at p <= 0.1" are not consistent with the results of the Json file
#1464
NickShanyt
closed
2 years ago
4
Job ends abruptly: GARD Ticket Number 1936978.new-silverback
#1463
venuraherath
closed
2 years ago
3
missing file ?
#1462
EricDeveaud
closed
2 years ago
2
{LEISR} positive log-likelihood due to infinite-like parameters
#1461
benjamin-elusers
closed
2 years ago
7
INSTALL_PREFIX not used for install
#1460
RobJY
closed
2 years ago
3
Fix build with clang 13.0.0
#1459
Jehops
closed
2 years ago
1
Fubar Output - help!
#1458
bob100077
closed
2 years ago
4
MEME not working (on datamonkey.org)?
#1457
lccomsa
closed
2 years ago
7
GARD not working on datamonkey.org
#1456
cadhlaf
closed
2 years ago
7
aBSREL - How can I get the optimized branch lengths (B) from the json file
#1455
ariadnamorales
closed
2 years ago
3
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