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vertesy
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pseudoBulk
Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq pipeline.
https://vertesy.github.io/pseudoBulk
MIT License
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turn pseudobulk from scRNAseq with logCPM value back to a seurat object with counts value?
#8
jiangzh-coder
closed
1 year ago
2
New Cell Ranger has different input format for clusters – I need to change that
#7
vertesy
opened
4 years ago
0
Better PCA analysis
#6
vertesy
opened
5 years ago
2
Strand specific mapping location of reads via stranded bigwig files
#5
vertesy
closed
5 years ago
1
Biological findings from pseudoBulk: intronic content and MALAT1
#4
vertesy
opened
5 years ago
0
pseudobulk analysis of all single-cell samples
#3
vertesy
opened
5 years ago
0
To Do
#1
vertesy
opened
5 years ago
0
Implement subset-bam and pseudo-bulk QC
#2
vertesy
opened
5 years ago
1