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vgteam
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gssw
efficient alignment of strings to partially ordered string graphs
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Switch to 64 bit node IDs
#31
jeizenga
closed
2 years ago
0
Fix multiple traceback algorithm at note boundaries
#30
jeizenga
closed
3 years ago
0
Remove files that collide with SSW files
#29
adamnovak
opened
3 years ago
0
Use a simde that builds on Clang 11
#28
adamnovak
closed
4 years ago
0
enable building on non-X86 with SIMDe
#27
mr-c
closed
4 years ago
0
Make build system more flexible
#26
mr-c
closed
4 years ago
0
Update to interface in pinning algorithm
#25
jeizenga
closed
5 years ago
0
Update gssw.c
#24
dillonl
closed
6 years ago
0
Fix bug in alternate traceback algorithm
#23
jeizenga
closed
7 years ago
0
Just score it
#22
ekg
closed
7 years ago
0
Better pinned alignment logic
#21
jeizenga
closed
7 years ago
0
Bug fix for suboptimal alignments
#20
jeizenga
closed
7 years ago
0
Add build status to README
#19
adamnovak
closed
7 years ago
0
Add .travis.yml
#18
adamnovak
closed
7 years ago
0
Add Travis
#17
adamnovak
closed
7 years ago
0
Add tests, software matrix filler, and improved E and F calculation.
#16
adamnovak
closed
7 years ago
0
Move gssw over to vgteam
#15
adamnovak
closed
7 years ago
0
Fix end bonus edge cases
#14
adamnovak
closed
7 years ago
2
End bonus
#13
adamnovak
closed
7 years ago
0
Small tweak to cigar construction function
#12
jeizenga
closed
7 years ago
1
Bug fix for pinned alignment full length bonus traceback
#11
jeizenga
closed
7 years ago
0
Full length alignment bonus for pinned alignment
#10
jeizenga
closed
7 years ago
0
Pinned alignment and pinned multi-alignment
#9
jeizenga
closed
8 years ago
1
Incorrect values in E matrix
#8
jeizenga
closed
7 years ago
4
Base quality adjusted alignment
#7
jeizenga
closed
8 years ago
2
Reworked traceback
#6
adamnovak
closed
8 years ago
2
Mismatch costs above ~128 not handled correctly
#5
adamnovak
opened
8 years ago
0
moved memory allocations up
#4
RaviGaddipati
opened
8 years ago
0
Moving allocations
#3
RaviGaddipati
opened
8 years ago
4
Moved makefile up one directory and refactored make directives to sta…
#2
ekg
closed
8 years ago
0
Corrections
#1
AlexKuhnle
closed
8 years ago
5