vgteam libhandlegraph issues

vgteam / libhandlegraph

Library for the Handle Graph abstraction

MIT License

21 stars 5 forks source link

issues

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Use library name in include to not upset Binder

#44 adamnovak closed 4 years ago
0
Only warn when magic number is missing on input

#43 adamnovak closed 4 years ago
0
combine_handles

#42 ekg opened 4 years ago
2
It is not clear if node_at_vector_offset/node_vector_offset are supposed to be 0-based, 1-based, or a mix.

#41 adamnovak opened 4 years ago
2
edge_index doesn't say if the edge has to be canonical or not.

#40 adamnovak opened 4 years ago
2
Add magic numbers to serialization interface

#39 jeizenga closed 4 years ago
0
rewrite_segment really takes a first and past-last to designate the range to rewrite

#38 adamnovak opened 4 years ago
0
for_each_step_on_handle will give you step_handle_t values for which get_handle_of_step will return the reverse of the handle_t you started with

#37 adamnovak opened 4 years ago
0
Add an operation to reassign IDs, and a default implementation for ID increment.

#36 adamnovak closed 4 years ago
0
Add overridable methods for total edges and total length

#35 adamnovak closed 4 years ago
3
Add increment_node_ids method to mutable handle graph

#34 glennhickey closed 5 years ago
0
External iterators: for language bindings

#33 JervenBolleman opened 5 years ago
12
set a node id increment hint

#32 ekg closed 5 years ago
4
helper functions for sorting handles, path_handles, and step_handles

#31 ekg closed 5 years ago
1
Add missing virtual destructors

#30 glennhickey closed 5 years ago
0
Sub-path support

#29 glennhickey opened 5 years ago
9
Acddd virtual destructors to interfaces

#28 jeizenga closed 5 years ago
0
positions of nodes in a sorted array

#27 ekg closed 5 years ago
1
Extend path position handle graph interface

#26 jeizenga closed 5 years ago
0
simplify hiearchy for path graphs

#25 glennhickey closed 5 years ago
1
Copy method

#24 glennhickey closed 5 years ago
1
Null handle proposal

#23 glennhickey opened 5 years ago
2
Empty handle

#22 glennhickey opened 5 years ago
5
Allow void returning iteratees on for_each_edge

#21 jeizenga closed 5 years ago
0
Design and Implement a Translation System

#20 adamnovak opened 5 years ago
2
Set up to be used in sglib

#19 adamnovak closed 5 years ago
0
Python bindings

#18 adamnovak closed 4 years ago
1
Proposal for a serialization interface

#17 jeizenga closed 5 years ago
2
Not Having A Class For Every Combination Of Features

#16 adamnovak opened 5 years ago
6
Proposal for modified interface to do reverse iteration on paths

#15 jeizenga closed 5 years ago
2
provide a method for ordered implementations to set handle iteration …

#14 ekg closed 5 years ago
1
correct rewriting semantics to handle rewriting any step in the path

#13 ekg closed 5 years ago
4
problem with semantics of rewrite_segment

#12 ekg closed 5 years ago
5
new interface no longer compiles in odgi due to include order dependence

#11 ekg closed 5 years ago
3
Optimize method for mutable handle graph

#10 jeizenga closed 5 years ago
2
Add optimize method to mutable handle graph interface

#9 jeizenga closed 5 years ago
1
HandleGraph::for_each_edge requires a bool return value from its iteratee while other for_each things in libhandlegraph don't

#8 adamnovak closed 5 years ago
0
Add more edits to the mutable path interface

#7 jeizenga closed 5 years ago
0
What primitives do we want for path editing?

#6 jeizenga closed 4 years ago
3
Path improvification

#5 jeizenga closed 5 years ago
6
MutablePathDeletableHandleGraph can't be cast to MutablePathMutableHandleGraph

#4 jeizenga closed 5 years ago
0
What should the path handle interface looks like?

#3 jeizenga closed 5 years ago
6
Circular Paths

#2 emikoifish closed 5 years ago
0
fix bug in for_each_edge in handle_graph.hpp

#1 emikoifish closed 5 years ago
0