vgteam sequenceTubeMap issues

vgteam / sequenceTubeMap

displays multiple genomic sequences in the form of a tube map

MIT License

178 stars 24 forks source link

issues

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Improve installation documentation

#458 adamnovak closed 2 days ago
0
Automatic node flipping not working on HPRC subgraphs

#457 adamnovak opened 1 week ago
0
Support for indexed GAF files

#456 jmonlong closed 3 days ago
0
Make ITCR September 16 slide on how to install Tube Map and use with Lancet

#455 adamnovak opened 1 month ago
1
Revise tube map install instructions to start from zero

#454 adamnovak closed 2 days ago
0
Bundle tube map for easy installation into an executable or tarball

#453 adamnovak opened 1 month ago
4
Add relative path support to local chunk script for Lancet integration

#452 adamnovak closed 1 month ago
0
Actually set a coordinate bar merge threshold to fix #447

#451 adamnovak closed 2 months ago
0
How to interpret variation graphs in SequenceTubeMap

#450 gforg34 opened 2 months ago
0
Off by 1 error on end position bounds check

#449 adamnovak opened 3 months ago
1
Graph can be entirely out of the image bounds in a downloaded image

#448 adamnovak opened 3 months ago
0
Axis is too prone to breaks when the graph is tiny nodes

#447 adamnovak closed 2 months ago
0
Visualizing a graph from short sequences

#446 pbreeder opened 3 months ago
2
Reads Tip Overlap

#445 shreyasun opened 3 months ago
0
Set the selected region description when the region descriptions arrive

#444 adamnovak closed 3 months ago
0
Add a system for "implied" tracks that are present in a chunk but not exposed by the server

#443 adamnovak closed 3 months ago
0
Fix spelling

#442 adamnovak closed 3 months ago
0
Manual pre-deployment testing

#441 adamnovak closed 3 months ago
0
Modified sorting logic to sort no-node reads

#440 shreyasun closed 3 months ago
0
New data dropdown option for Lancet example

#439 shreyasun closed 3 months ago
0
"Path to graph file not allowed" error when loading a link (or config data source) to a URL bed region

#438 adamnovak closed 3 months ago
2
Aligned first and last coordinate

#437 shreyasun closed 3 months ago
0
MinZoom

#436 shreyasun closed 3 months ago
0
Enable removing node sequences when reads are present

#435 shreyasun closed 3 months ago
0
You can hit the max zoom out in X without being able to see everything in Y

#434 adamnovak closed 3 months ago
1
Deploy tube map and publish Lancet November examples somewhere so the paper can use them

#433 adamnovak closed 3 months ago
0
Configure server to have Lancet BED URL as a top-level option alongside custom

#432 adamnovak closed 3 months ago
4
Reads from different samples interleave oddly when skipping nodes

#431 adamnovak closed 3 months ago
1
Reads aren't clickable within nodes

#430 adamnovak opened 4 months ago
0
First coordinate on the coordinate bar can start further left than I can pan

#429 adamnovak closed 3 months ago
1
Add a script that can batch import and explain Lancet data in the November format

#428 adamnovak closed 4 months ago
1
Document which variant is meant to go with which Lancet example

#427 adamnovak closed 4 months ago
0
Use relative paths in link to view

#426 adamnovak closed 4 months ago
0
Resolved extra horizontal space between nodes with a coordinate bar break

#425 shreyasun closed 4 months ago
0
Better handling of the case where vg is not installed

#424 adamnovak opened 5 months ago
0
Good wrapper script and documentation for how to inspect a list of variants

#423 adamnovak closed 2 days ago
1
Allow eliding node sequences when reads are present

#422 adamnovak closed 3 months ago
8
Curved reads/paths stay highlighted after mouse over

#421 jmonlong closed 3 weeks ago
1
Absolute path to BED is used in link to view instead of relative path

#420 adamnovak closed 4 months ago
0
Reads can become oddly wide

#419 adamnovak opened 5 months ago
0
Tips of reads can overlap in X by fractions of a base

#418 adamnovak opened 5 months ago
3
Support GAF alignment files

#417 adamnovak opened 5 months ago
2
Add remote URL support to GBZBase backend

#416 adamnovak opened 5 months ago
0
Add read support to GBZBase backend

#415 adamnovak opened 5 months ago
0
Remove Node Sequences Option

#414 shreyasun closed 4 months ago
1
HPRC Draft Pangenome Graphs fail to load

#413 adadiehl opened 5 months ago
1
Add Visualization Examples

#412 ducku closed 5 months ago
2
vg chunk failed

#411 this-is-Mayank opened 5 months ago
5
Add HTML Test Reporter

#410 ducku closed 5 months ago
0
Improve Markdown formatting

#409 adamnovak closed 6 months ago
0