vibbic biosegment issues

vibbic / biosegment

BioSegment is a software stack to enable segmentation of microscopy data using machine learning models.

https://vibbic.github.io/biosegment/

GNU General Public License v3.0

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issues

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get-poetry.py is deprecated and breaks docker-compose

#75 patrickstock opened 2 years ago
0
Bump lxml from 4.6.3 to 4.6.5 in /backend/app

#74 dependabot[bot] opened 2 years ago
0
Bump fastapi from 0.54.2 to 0.65.2 in /backend/app

#73 dependabot[bot] opened 2 years ago
0
Bump postcss from 7.0.35 to 7.0.39 in /frontend

#72 dependabot[bot] opened 2 years ago
0
Bump url-parse from 1.4.7 to 1.5.10 in /frontend

#71 dependabot[bot] opened 2 years ago
0
Celery5

#70 berombau closed 3 years ago
0
Redefine relational database

#69 JorisRoels opened 3 years ago
0
Improved handling of projects

#68 SilverViking opened 3 years ago
0
Reorganize data folder layout

#67 SilverViking opened 3 years ago
0
Easier installation of default data folder

#66 SilverViking opened 3 years ago
0
Active learning workflow

#65 JorisRoels opened 3 years ago
0
Add ability to annotate images in an external tool.

#64 SilverViking opened 3 years ago
0
Ability to upload new datasets

#63 SilverViking opened 3 years ago
0
Support for multichannel microscopy data

#62 JorisRoels opened 3 years ago
0
Install BioSegment on SuperMario

#61 SilverViking opened 3 years ago
0
Support external annotations

#60 berombau opened 3 years ago
0
Implement annotations_to_tif3d

#59 berombau opened 4 years ago
0
Publish Docker images

#58 berombau opened 4 years ago
0
add basic documentation

#57 berombau closed 4 years ago
0
CRUD actions for ownership

#56 berombau opened 4 years ago
0
Delete does not delete referenced files

#55 berombau opened 4 years ago
0
Create LICENSE

#54 berombau closed 4 years ago
0
frontend linting is broken

#53 berombau opened 4 years ago
1
Only update changed properties

#52 berombau opened 4 years ago
0
bug in segmentation of TIFF dataset

#51 berombau closed 4 years ago
0
Update frontend dependencies to Vue 3.x

#50 berombau opened 4 years ago
0
backend KeyError bug in crud_user.py

#49 berombau opened 4 years ago
0
Alter input size in retraining interface

#48 berombau opened 4 years ago
0
Multichannel support in backend

#47 berombau opened 4 years ago
0
File browser for server side file selection

#46 berombau opened 4 years ago
0
Support models trained on dual GPU machine, on single GPU machines.

#45 SilverViking closed 4 years ago
2
dash_frontend viewer loading feedback

#44 berombau opened 4 years ago
0
gpu_worker Substantial drift from backend_worker may mean clocks are out of sync.

#43 berombau opened 4 years ago
0
Windows support for scripts/create-data-folder.sh

#42 berombau opened 4 years ago
0
Documentation slice_id and resolution.z

#41 berombau opened 4 years ago
0
Annotations do not update on switching selected dataset

#40 berombau opened 4 years ago
0
Updating annotations by moving in viewer is broken

#39 berombau opened 4 years ago
0
Feature annotations

#38 berombau closed 4 years ago
0
Annotation path width is not accurate when zooming

#37 berombau opened 4 years ago
0
Added Windows support (fixes #1)

#36 SilverViking closed 4 years ago
0
Default file format Biosegment

#35 JorisRoels opened 4 years ago
0
Improve validation scripts

#34 JorisRoels closed 4 years ago
0
correct return code in lint script

#33 berombau closed 4 years ago
0
Feature retraining

#32 berombau closed 4 years ago
0
Improve ci

#31 berombau closed 4 years ago
0
Remove hardcoded paths

#30 berombau closed 4 years ago
0
augmenter object in neuralnets retraining takes 40 secs

#29 berombau opened 4 years ago
1
Backend tests hang

#28 SilverViking opened 4 years ago
0
Get rid of hard-coded WORKER_ROOT_DATA_FOLDER

#27 SilverViking closed 4 years ago
0
BioImage Model Zoo support

#26 JorisRoels opened 4 years ago
0