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vrmarcelino
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CCMetagen
Microbiome classification pipeline
GNU General Public License v3.0
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No such file or directory error
#67
jeremysutherland
opened
1 month ago
3
error "out of memory"
#66
tulikasriv26
opened
4 months ago
7
Merge branch `dev` into `master` - `v1.5.0`
#65
vinisalazar
closed
5 months ago
0
Restore master branch
#64
vinisalazar
closed
5 months ago
0
Database headers
#63
vinisalazar
closed
2 months ago
4
Tests
#62
vinisalazar
closed
6 months ago
0
error in taxdump.tar.gz
#61
igsbma
closed
1 month ago
4
Prebuilt indexes unavailable
#60
MortenEneberg
opened
8 months ago
10
Code improvements
#59
vinisalazar
closed
6 months ago
0
Tidy up repository
#58
vinisalazar
closed
6 months ago
0
Update setup
#57
vinisalazar
closed
8 months ago
0
CCMetagen `1.4.2` - test release
#56
vinisalazar
closed
9 months ago
1
IndexError: list index out of range
#55
pedres
closed
6 months ago
4
How much memory does kma require?
#54
hehanhhh
closed
11 months ago
3
ValueError for taxid when using custom database
#53
brambloemen
closed
1 year ago
2
/bin/sh: 1: ktImportText: Permission denied
#52
lichen-fungus
closed
1 year ago
3
Indexing custom database returns empty *.length.b file
#51
longwayl
closed
1 year ago
1
download the "ncbi_nt_no_env_11jun2019" database error
#50
hehanhhh
closed
1 year ago
5
Unexpected end of file and Malformed input error
#49
Rohit-Satyam
closed
1 year ago
2
TypeError: 'NoneType' object is not iterable
#48
fernanarr
closed
1 year ago
7
Total reads equal to twice the number of fragments?
#47
alvanuffelen
closed
1 year ago
9
310 Segmentation fault (core dumped)
#46
taniagmangolini
closed
1 year ago
2
Found very few number of fungi
#45
DrYoungOG
closed
1 year ago
1
Discrepancy on the number of fragments between *ccm.csv and *kmaout.frag.
#44
anacarolsoares
closed
1 year ago
5
Error with CCMetagen.py
#43
DrYoungOG
closed
1 year ago
3
Something Error of KMA
#42
TaoCheng98
closed
1 year ago
7
Segmentation error in KMA
#41
taniagmangolini
closed
1 year ago
3
When using a custom DB, metagen.py -r nt doesn't recognise any NCBI taxa
#40
Steven-Kemp
closed
1 year ago
2
New reference databases
#39
yashasdevasurmutt
closed
2 years ago
1
Unable to unzip the downloaded database
#38
Rohit-Satyam
closed
1 year ago
11
Read error in KMA Mapping
#37
tuck82er
closed
1 year ago
5
Unable to construct database following your instruction
#36
liuchen92
closed
2 years ago
3
Index out of range when using CCMetagen.py
#35
tamascogustavo
closed
2 years ago
2
ValueError: 1327640 taxid not found
#34
taniagmangolini
closed
2 years ago
3
Database download problem
#33
AMPByrne
closed
2 years ago
1
kma error 2
#32
vasudhajain29
closed
2 years ago
9
parameters for low-biomass samples
#31
MjelleLab
closed
3 years ago
3
ValueError: invalid literal for int() with base 10: 'NW_001849834.1
#30
MjelleLab
closed
3 years ago
3
Changed populate_w_tax function
#29
karentherkelsen
closed
3 years ago
0
Added Krona plot mode option
#28
karentherkelsen
closed
3 years ago
0
Issue installing libz-dev
#27
qfaber
closed
3 years ago
1
how to represent top most abundant species
#26
saras224
closed
3 years ago
2
CCMetagen_merge input suffix discrepancy
#25
mihkelvaher
closed
3 years ago
3
rename_nt.py is not considering multi seq IDs in fasta headers
#24
mihkelvaher
closed
3 years ago
1
Underestimation possibility of abundance while using db containing subsequences?
#23
mihkelvaher
closed
3 years ago
5
Databases-related inquiry
#22
Ahmed-Shibl
closed
3 years ago
5
Obtaining RPM, fragments, and proportion of mapper reads
#21
Tj-Idowu
closed
3 years ago
2
Machine specs for making a large custom database
#20
akramirez
closed
3 years ago
6
Run out of memory
#19
SethCommichaux
closed
3 years ago
2
Custom Database
#18
punnettsun
closed
3 years ago
3
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