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walaj
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VariantBam
Filtering and profiling of next-generational sequencing data using region-specific rules
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`variant` hangs on Linux ARM64
#24
martin-g
opened
1 week ago
0
nbase filter
#23
zhoudreames
opened
8 months ago
2
variant command overestimates max coverage with Nanopore reads
#22
pmaragno
opened
1 year ago
5
Installing VariantBam
#21
maingoc303
closed
1 year ago
1
-b option truncates output at 10k
#20
NicRamb
closed
1 year ago
1
Motif selection bam read error
#19
sammilee898
opened
4 years ago
2
Test runs - bams missing
#18
bknisbac
opened
4 years ago
0
Soft-clipping with linked-region filter
#17
daynefiler
opened
5 years ago
0
Another possible problem with Example use 7: not all decoy reads filtered
#16
naumenko-sa
closed
5 years ago
2
Possible problem with Example use 7: cannot filter out reads
#15
naumenko-sa
closed
5 years ago
2
-b option truncates output at 10k
#14
mikheyev
closed
6 years ago
4
Options for parallelization/multi-core runs
#13
chapmanb
opened
6 years ago
10
Slow reading of CRAM platinum genome
#12
hannespetur
closed
7 years ago
3
QC fail flag fixes for mix/max coverage
#11
chapmanb
closed
7 years ago
0
VCF parsing error on extra linked regions with long ANN key/value in INFO field
#10
chapmanb
closed
7 years ago
2
Add QCfail flag instead of removing reads for maximum coverage
#9
chapmanb
closed
6 years ago
6
`-q` outputs no result
#8
die4live
closed
7 years ago
1
It should be `mate_mapped` in README instead of `mapped_mate`
#7
die4live
closed
7 years ago
1
Can't build in boost static libs from default install locations
#6
maplesond
closed
7 years ago
4
CPPFLAGS and LDFLAGS not propagated to child projects
#5
maplesond
closed
8 years ago
4
Referring to target sequences
#4
maplesond
closed
8 years ago
1
Possible problem with use case 4
#3
maplesond
closed
8 years ago
2
Crash (Signal 11) when trying to process an unsorted BAM
#2
maplesond
closed
8 years ago
4
Usage message indicates '-g' and '-r' options are required.
#1
maplesond
closed
8 years ago
1