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waldronlab
/
MultiAssayExperiment
Bioconductor package for management of multi-assay data
https://waldronlab.io/MultiAssayExperiment/
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use "sex" instead of "gender"
#173
LiNk-NY
closed
7 years ago
0
remove `getHits` methods for RSE
#172
LiNk-NY
closed
7 years ago
0
please add the given method to allow subsetByRow with a VcfStack component
#171
vjcitn
closed
7 years ago
6
Create genderpred
#170
carmenbr61
closed
7 years ago
7
RangedRaggedAssay show method errors for non-atomic mcols column
#169
lwaldron
closed
7 years ago
1
RangedRaggedAssay assay() method returns only NAs for partial overlaps
#168
lwaldron
closed
7 years ago
3
Incomplete man page for ?`gather,MultiAssayExperiment-method`
#167
lwaldron
closed
7 years ago
1
show() problem for RangedRaggedAssay, signature problem for assay,RangedRaggedAssay,missing-method
#166
lwaldron
closed
7 years ago
4
include additional mcols in assay,RangedRaggedAssay,missing-method
#164
LiNk-NY
closed
6 years ago
1
lintr-bot configuration
#163
LiNk-NY
closed
5 years ago
3
"reduce" method for MultiAssayExperiment
#162
lwaldron
closed
6 years ago
5
gather method should also return primary names
#161
lwaldron
closed
8 years ago
2
rename extract() method
#160
lwaldron
closed
8 years ago
2
show method for RangedRaggedAssay()
#159
LiNk-NY
closed
8 years ago
2
implement coercion function from PharmacoSet to MultiAssayExperiment
#158
LiNk-NY
closed
5 years ago
4
`dimnames` for MultiAssayExperiment
#157
LiNk-NY
closed
8 years ago
0
no need to define separate row/colnames
#156
mtmorgan
closed
8 years ago
0
constructor updates and unit tests
#155
lshep
closed
8 years ago
1
GDSC1000 cell line data
#154
chapmandu2
closed
5 years ago
6
Define a `$` method for `MultiAssayExperiment`
#153
lwaldron
closed
8 years ago
4
Need methods to set metadata of MultiAssayExperiment
#152
lwaldron
closed
8 years ago
1
MultiAssayExperiment constructor supports empty objects
#151
mtmorgan
closed
8 years ago
2
re-ordering of columns
#150
lwaldron
closed
8 years ago
2
constructor errors with single-row pData
#149
lwaldron
closed
8 years ago
0
updateObject method for MultiAssayExperiment
#148
LiNk-NY
closed
8 years ago
0
Travis-CI Erroring
#147
LiNk-NY
closed
8 years ago
4
.git folder too big
#146
LiNk-NY
closed
8 years ago
4
MultiAssayExperiment creation from TCGA data vignette
#145
schifferl
closed
8 years ago
0
Modify API to reflect changes
#144
LiNk-NY
closed
8 years ago
1
`c` method for `MultiAssayExperiment`
#143
LiNk-NY
closed
6 years ago
7
enhance replacementMethod for ExperimentList
#142
LiNk-NY
closed
5 years ago
5
completeCases method
#141
LiNk-NY
closed
8 years ago
1
drop argument = FALSE
#140
LiNk-NY
closed
8 years ago
1
Zero dim arguments
#139
LiNk-NY
closed
8 years ago
1
Rename sampleMap column names
#138
LiNk-NY
closed
8 years ago
0
Remove warning message
#137
LiNk-NY
closed
8 years ago
1
ExperimentList argument informative error
#136
LiNk-NY
closed
8 years ago
0
constructed `pData`
#135
LiNk-NY
closed
8 years ago
0
Clean up `show` method
#134
LiNk-NY
closed
8 years ago
2
Rename Elist class and accessor
#133
LiNk-NY
closed
8 years ago
3
severe missingness in ovarian pData?
#132
vjcitn
closed
5 years ago
4
Add completeCases method for MultiAssayExperiment
#131
aedin
closed
8 years ago
8
Sample Type
#130
aedin
closed
6 years ago
5
more guidance towards the S3 bucket exemplars?
#129
vjcitn
closed
8 years ago
1
genome of seqinfo in serialized RDS
#128
vjcitn
closed
6 years ago
9
broken subset by columns for ov MAE
#127
lwaldron
closed
8 years ago
8
subsetByAssay(), subsetByRow(), subsetByColumn() still around
#126
lwaldron
closed
8 years ago
3
Vignette not building
#125
lwaldron
closed
8 years ago
1
MultiAssayExperiment-class.R Validity Check
#124
schifferl
closed
8 years ago
1
Use character vectors in sampleMap
#123
lwaldron
closed
8 years ago
0
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