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waldronlab
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MultiAssayExperiment
Bioconductor package for management of multi-assay data
https://waldronlab.io/MultiAssayExperiment/
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Update "Soon to be documented/developed" section of vignette
#223
lwaldron
closed
6 years ago
2
undocumented expectations for ... in MultiAssayExperiment-helpers
#222
lwaldron
closed
6 years ago
1
wideFormat additional arguments ignored?
#221
lwaldron
closed
6 years ago
2
?MultiAssayExperiment-helpers does not give details on "..."
#220
lwaldron
closed
6 years ago
1
Help users decide between SummarizedExperiment and MultiAssayExperiment in vignette
#219
lwaldron
closed
6 years ago
0
return sensible error when `[` method missing
#218
LiNk-NY
closed
6 years ago
1
mergeReplicates not working for SummarisedExperiment and ExpressionSet
#217
jonaszierer
closed
6 years ago
6
Simpler Extraction for Matching Clinical Data
#216
DarioS
closed
6 years ago
5
Use of Endogenous in Vignette
#215
DarioS
closed
6 years ago
1
subsetByRow - assay selective subsetting
#214
LiNk-NY
closed
6 years ago
3
[Bioc-devel] MultiAssayExperiment Subsetting Fails if Column Data Has One Column
#213
LiNk-NY
closed
7 years ago
0
Additional columns in sampleMap removed
#212
frederikziebell
closed
5 years ago
8
package description
#211
lgeistlinger
closed
7 years ago
5
Unevaluated "cheatsheet" vignette.
#210
lwaldron
closed
7 years ago
1
methods for ExperimentList
#209
lwaldron
closed
6 years ago
3
MultiAssayExperiment should contain Annotated
#208
lawremi
closed
5 years ago
4
pradMAEO-RTCGAToolbox function definition
#207
RM-SCB
closed
7 years ago
3
sampleMap(mae)$assay required to be factor
#206
lwaldron
closed
7 years ago
2
no slot of name "colData" for this object of class "MultiAssayExperiment"
#205
mdozmorov
closed
7 years ago
5
Add a MatchedAssayExperiment derived class
#204
lwaldron
closed
7 years ago
0
Error when using subsetByRow with GRanges
#203
LiNk-NY
closed
7 years ago
0
intersectRows() not working
#202
lwaldron
closed
7 years ago
0
Fix pradMAEO-RTCGAToolbox vignette
#201
lawremi
closed
7 years ago
1
add an example dataset
#200
lawremi
closed
7 years ago
2
lose some dependencies
#199
lawremi
closed
6 years ago
11
`subsetByRow()` does not re-order rows
#198
lwaldron
closed
7 years ago
2
deprecate RangedRaggedAssay
#197
lwaldron
closed
7 years ago
1
translating ID <-> ID, and ID <-> ranges
#196
lwaldron
closed
4 years ago
6
experiment-specific `assay()` behavior
#195
lwaldron
closed
5 years ago
8
fail gracefully or subset for partly infeasible row selection
#194
vjcitn
closed
7 years ago
11
as genomic components enter ExperimentList verify compatibility
#193
vjcitn
closed
6 years ago
3
subsetByColData()
#192
lwaldron
closed
3 years ago
3
reduce() fails with one-column pData
#191
lwaldron
closed
7 years ago
2
pDataCols argument to rearrange() is ignored
#190
lwaldron
closed
7 years ago
0
rearrange warning + error
#189
lwaldron
closed
7 years ago
6
reduce MAE should reorder
#188
aedin
closed
7 years ago
5
error in curatedMetagenomicData example
#187
lwaldron
closed
5 years ago
1
Getting a matrix of genes x samples for RangedRaggedAssay
#186
lwaldron
closed
6 years ago
8
update show method
#185
lwaldron
closed
7 years ago
3
added upset_samples
#184
vjcitn
closed
7 years ago
0
error in `rearrange` method for GBM object
#183
lwaldron
closed
6 years ago
9
Error in `RangedRaggedAssay` show method with non-numeric metadata column
#182
lwaldron
closed
7 years ago
6
assay,RangedRaggedAssay-method slow
#181
LiNk-NY
closed
7 years ago
2
misleading documentation of `assay()` method with ranges
#180
lwaldron
closed
7 years ago
1
performance issues when for subset and show with RangedRaggedArray
#179
lwaldron
closed
7 years ago
6
bug fix: data.frame name munging
#178
carmenbr61
closed
7 years ago
1
shape argument in `rearrange`
#177
LiNk-NY
closed
7 years ago
0
rename clusterSex function to general use function
#176
LiNk-NY
closed
7 years ago
4
NAMESPACE conflict of `gather()` with library(tidyr)
#175
lwaldron
closed
7 years ago
11
transpose=TRUE/FALSE argument for assay()
#174
lwaldron
closed
7 years ago
1
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