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waldronlab
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curatedMetagenomicDataAnalyses
Analyses in R and Python Using curatedMetagenomicData
https://waldronlab.io/curatedMetagenomicDataAnalyses/
Creative Commons Attribution 4.0 International
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Retrieve biom table and metadata tsv for entire dataset
#49
tydymy
opened
3 months ago
0
Error Assay.type
#48
MinLuke
opened
1 year ago
0
Error in access data
#47
MinLuke
closed
1 year ago
1
retrieve raw data
#46
bfebles
closed
1 year ago
2
whether the study factor needs to be considered?
#45
zhangy2361
opened
1 year ago
0
Fix GitHub action
#44
jwokaty
closed
2 years ago
0
Remove buildx
#43
jwokaty
closed
2 years ago
0
conda install available ?
#42
ADGM
closed
2 years ago
1
Age and Sex metaanalysis vignettes broken in cMD 3
#41
lwaldron
closed
2 years ago
1
Actions use bioc-3.14
#40
lwaldron
closed
2 years ago
1
BiocManager::install("waldronlab/curatedMetagenomicAnalyses") failed
#39
zckoo007
closed
2 years ago
5
Full path to vignettes
#38
d-golzato
closed
2 years ago
2
Update DESCRIPTION
#37
lwaldron
closed
2 years ago
0
README.md links don't work from pkgdown
#36
lwaldron
closed
2 years ago
3
Fix docker issues
#35
jwokaty
closed
2 years ago
2
Add NUI Galway vignette
#34
jwokaty
closed
2 years ago
0
gh-pages missing vignette
#33
schifferl
closed
2 years ago
1
Update script and vignettes for curatedMetagenomicDataTerminal
#32
jwokaty
closed
2 years ago
0
possible to change repo name
#31
schifferl
closed
2 years ago
5
add new vignette
#30
schifferl
closed
2 years ago
0
Fix install for python3-skbio
#29
jwokaty
closed
2 years ago
0
skbio not installing
#28
jwokaty
closed
2 years ago
0
login screen does not display properly
#27
schifferl
closed
2 years ago
2
Add toc
#26
jwokaty
closed
3 years ago
0
Pkgdown
#25
jwokaty
closed
3 years ago
0
Create a pkgdown site for the analyses
#24
jwokaty
closed
3 years ago
1
Create a table of contents for the analyses in the README
#23
jwokaty
closed
3 years ago
0
Update NAMESPACE
#22
jwokaty
closed
3 years ago
0
Add suggested packages to DESCRIPTION
#21
jwokaty
closed
3 years ago
0
Add link to paper and fix figure
#20
jwokaty
closed
3 years ago
1
Add scikit-bio
#19
jwokaty
closed
3 years ago
0
Add installation notebook
#18
jwokaty
closed
3 years ago
0
Ipynb sex analysis pr bnc
#17
jwokaty
closed
3 years ago
1
Make symbolic link for README.md
#16
jwokaty
closed
3 years ago
0
README in docker
#15
jwokaty
closed
3 years ago
1
Changes to Python analysis notebook
#14
jwokaty
closed
3 years ago
0
Make a pip requirements file to version Python packages
#13
jwokaty
opened
3 years ago
0
Fix secrets to push to Docker Hub
#12
jwokaty
closed
3 years ago
1
Push docker to docker hub
#11
jwokaty
closed
3 years ago
0
Don't run BiocCheck in GHA
#10
lwaldron
closed
3 years ago
0
Docker
#9
jwokaty
closed
3 years ago
0
WIP Add Dockerfile
#8
jwokaty
closed
3 years ago
0
Duplicate row names in dataDump
#7
jwokaty
closed
3 years ago
1
Improve namespace and imports
#6
jwokaty
closed
3 years ago
3
Explicitly refer to dplyr, cMD; use native pipes
#5
jwokaty
closed
3 years ago
2
Make a Dockerhub image
#4
lwaldron
closed
3 years ago
1
get GHA building
#3
lwaldron
closed
3 years ago
3
First draft of the Vignette for Sex metanalysis on microbial species
#2
d-golzato
closed
3 years ago
1
translate cMD1 paper analyses to cMD3
#1
lwaldron
opened
3 years ago
2