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wdecoster
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cramino
A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
MIT License
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Reads length within specific regions
#31
Mannyari
closed
1 month ago
3
Always filter out secondary alignments, always remove soft clipped bases
#30
fellen31
closed
3 months ago
1
Should --ubam really include secondary alignments?
#29
fellen31
closed
3 months ago
3
Help understanding Normalized read count per chromosome across techinical replicates
#28
NikoLichi
closed
5 months ago
4
Multiple file inputs
#27
Shians
closed
5 months ago
3
Report aligned bases
#26
Shians
opened
5 months ago
2
Option to exclude contigs in the reference
#25
SLAment
opened
6 months ago
2
thread 'main' panicked at 'Unexpected type of Aux for phaseset
#24
jmcdani
closed
6 months ago
11
fix: reading from stdin
#23
mbhall88
closed
8 months ago
1
Feature: Compute & export data for bivariate plots
#22
vejnar
closed
7 months ago
3
Delete filtering contigs on `_` in `--karyotype`
#21
Adoni5
closed
11 months ago
1
Fix to empty narmalised karyotype counts
#20
Adoni5
closed
11 months ago
1
Not including chromosome with `_` in the name
#19
Adoni5
closed
11 months ago
4
thread 'main' panicked at 'index out of bounds: when running with `--karyotype`
#18
Adoni5
closed
11 months ago
0
Write out histogram bin counts rather than length
#17
holtgrewe
opened
11 months ago
2
Dorado BAM output and stats
#16
mattloose
closed
11 months ago
6
Does cramino support unmapped bam?
#15
ymcki
closed
1 year ago
2
thread 'main' panicked at 'Unexpected type of Aux I32(8) error
#14
prasundutta87
closed
1 year ago
8
--spliced not supported? (Question)
#13
MrKevinDC
closed
1 year ago
3
Add --reference argument for cram decompression
#12
ASLeonard
closed
1 year ago
3
Add splice mode and reading from stdin
#11
wdecoster
closed
1 year ago
0
Unify extract
#10
wdecoster
closed
1 year ago
0
Create LICENSE
#9
wdecoster
closed
1 year ago
0
adding option for min_read_len
#8
wdecoster
closed
1 year ago
0
Mean identity calculated as more than 100%
#7
danrdanny
closed
1 year ago
5
Identities and splicing
#6
wdecoster
closed
1 year ago
0
Optionally output as json
#5
wdecoster
opened
1 year ago
1
More dynamically handle number of bins for read length histogram
#4
wdecoster
closed
1 year ago
1
Support older glibc
#3
wdecoster
closed
1 year ago
1
Improve histograms: use integers for read length and less decimals for identities
#2
wdecoster
closed
1 year ago
1
Feature request: filter on rlen/qlen
#1
wdecoster
closed
1 year ago
1