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welch-lab
/
liger
R package for integrating and analyzing multiple single-cell datasets
GNU General Public License v3.0
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problem in createLiger function
#218
robin1-2
closed
3 years ago
2
Error while running louvainCluster for scATAC + scRNA integration
#217
KeyTals
closed
3 years ago
6
Questions about online learning
#216
Ping-lin14
closed
3 years ago
8
Way to write the UINMF Optimization
#215
yjgeno
closed
3 years ago
1
scaleNotCenter Error
#214
Ping-lin14
closed
3 years ago
2
UINMF while loop error on own data
#213
shazanfar
closed
3 years ago
5
Proper axis labels 2D Plots
#212
samuel-marsh
closed
5 months ago
2
Memory issue with the format of input data
#211
tkisss
closed
3 years ago
3
Error in object@H.norm[, dims.use] : subscript out of bounds
#210
qoldt
closed
3 years ago
3
Called from: CheckPackage(package = "MacoskoLab/liger", repository = "github")
#209
edbels
closed
3 years ago
6
selectGenes No genes were selected; lower var.thresh values or choose 'union' for combine parameter
#208
Roger-GOAT
closed
2 years ago
14
scaleNotCenter doesn't seem to scale.
#207
koenvandenberge
closed
3 years ago
2
Removing dimensions for mitochondrial content.
#206
stemangiola
closed
2 years ago
2
Is it possible to annotate different cell clusters using liger?
#205
hugo-username
closed
3 years ago
2
Error: object 'createLiger' not found
#204
omkarchandra
closed
3 years ago
1
Version numbering
#203
samuel-marsh
closed
3 years ago
6
Add U-ANLS initial code
#202
Akriebs
closed
3 years ago
0
Error in h(simpleError(msg, call)) in scaleNotCenter
#201
Evi050
closed
3 years ago
7
Merge Online branch to master
#200
cgao90
closed
3 years ago
0
Online branch -- Missing_gene removal
#199
JZL
closed
3 years ago
1
Merge datasets on marker plots
#198
alexisweber
closed
3 years ago
1
filtered export from ArchR + Seurat scRNA?
#197
wfma
closed
5 months ago
1
Liger optimizeALS function - Select k lower than the number of cells in smallest dataset: 0
#196
strawberry789
closed
10 months ago
12
Suggestions for quick merge (or integrate) scATAC replications
#195
wangmeijiao
closed
2 years ago
0
Error with future package
#194
Goultard59
closed
10 months ago
1
Add `keep.meta` parameter to `ligerToSeurat`
#193
samuel-marsh
closed
5 months ago
7
scRNA-seq count matrices output by CellRanger
#192
SchachtmanLab
closed
3 years ago
1
subsetLiger and reorganizeLiger changes
#191
samuel-marsh
closed
3 years ago
2
Use Seurat's object creation and data setter functions
#190
mojaveazure
closed
3 years ago
0
Feedback form is not accessible
#189
samuel-marsh
closed
3 years ago
1
PBMC Vignette Plotting Issue
#188
taekb
closed
3 years ago
2
RunQuantileNorm error: trying to get slot "H" from an object of a basic class ("list") with no slots
#187
ShanSabri
closed
2 years ago
5
Fix subsetLiger() cell.data copying when subsetting before clustering.
#186
derpylz
closed
3 years ago
0
hg19_genes.bed and hg19_promoters.bed files
#185
arutik
closed
2 years ago
5
bed file format for ATAC-seq integration
#184
PeterZZQ
closed
2 years ago
1
Release versioning is inconsistent
#183
raivivek
closed
2 years ago
0
set.dr.lims default?
#182
samuel-marsh
opened
4 years ago
0
Error in reorganizeLiger (w/ fix)
#181
samuel-marsh
closed
3 years ago
1
Add drop = F when subsetting matrix
#180
tkamath1
closed
3 years ago
2
selectGenes issue
#179
tanya-karagiannis
closed
4 years ago
1
could not find function "createLiger"
#178
tanasa
closed
4 years ago
4
Cross species integration of data
#177
mamtagiri
closed
10 months ago
1
Error in subsetLiger and/or seuratToLiger
#176
samuel-marsh
closed
4 years ago
1
online_iNMF error
#175
samuel-marsh
closed
10 months ago
4
error in optimizeALS
#174
Shawn10312
closed
3 years ago
3
Revert factorization using LIGER through Seurat Wrapper
#173
fbrundu
closed
2 years ago
0
Error in createLiger
#172
Midsummer723
closed
4 years ago
4
Feature Request: Plotting Warning Messages/Do Not Plot
#171
samuel-marsh
closed
4 years ago
4
plotGene issue Error in `.rowNamesDF<-`(x, value = value)
#170
Timothy-WANG
closed
2 years ago
1
issue in integrade seurat object by liger
#169
EDGtentacles
closed
4 years ago
1
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