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welch-lab
/
liger
R package for integrating and analyzing multiple single-cell datasets
GNU General Public License v3.0
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Feature Request: Plotting Warning Messages/Do Not Plot
#171
samuel-marsh
closed
4 years ago
4
plotGene issue Error in `.rowNamesDF<-`(x, value = value)
#170
Timothy-WANG
closed
3 years ago
1
issue in integrade seurat object by liger
#169
EDGtentacles
closed
4 years ago
1
pre-processed data for scRNAseq and scATACseq integration vignette not available
#168
emmagraham
closed
4 years ago
2
About runWilcoxon and norm.data
#167
kuang-da
closed
4 years ago
3
Plotting Issue (Online Branch)
#166
samuel-marsh
closed
3 years ago
4
Enhancements for plotGene and plotGenes and plotByDatasetAndCluster
#165
samuel-marsh
closed
4 years ago
4
Update quantile_norm to allow performing on list objects
#164
skpalan
closed
4 years ago
0
can i get a new dgcmatrix after integrading dataset by liger
#163
EDGtentacles
closed
4 years ago
3
inconsistencies with tsne/umap projection helper functions
#162
jfx319
closed
4 years ago
3
Integrating SCTransform-normalized data with LIGER
#161
minigel
closed
3 years ago
2
makeFeaturematrix not available
#160
ankushs0128
closed
4 years ago
3
Update Documentation info
#159
samuel-marsh
closed
4 years ago
0
Issues with makeFeatureMatrix
#158
SaskiaFreytag
closed
4 years ago
2
Update utilities.R
#157
thomas-reimonn
closed
1 year ago
0
Fix cell order bug in subsetLiger
#156
vkozareva
closed
4 years ago
0
Error in RunQuantileAlignSNF function
#155
mittalan
closed
4 years ago
6
Liger installation on Windows
#154
stefanonard85
closed
4 years ago
2
Substitute quantileAlignSNF with quantile_norm
#153
skpalan
closed
4 years ago
0
Add new funtionalities including runUMAP and runGSEA
#152
skpalan
closed
4 years ago
0
Imputation of Expression Data
#151
whitleyo
closed
3 years ago
2
Error using Seurat Wrapper
#150
ccruizm
closed
4 years ago
1
when use runTSNE and PlotByDatasetandCluster the data did't cluster
#149
lexie-lee
closed
3 years ago
1
Running LIGER on Seurat objects: Error at RunOptimizeALS
#148
minigel
closed
4 years ago
2
error when performs seuratToLiger
#147
yiranzou12138
closed
4 years ago
1
installation of v0.5
#146
orrzor
closed
4 years ago
2
help! I have some troubles when I install liger packages
#145
lexie-lee
closed
4 years ago
3
Adding several new functionalities
#144
skpalan
closed
4 years ago
4
Problems with seuratToLiger()
#143
RegnerM2015
closed
4 years ago
1
dependency ‘RANN.L1’ is not available for package ‘liger’
#142
jhu99
closed
4 years ago
0
Create a bioconda/conda package
#141
raivivek
closed
4 years ago
2
RANN.L1 dependency no longer on CRAN
#140
ac3957
closed
4 years ago
4
LIGER removes genes and no object created
#139
w2niva
closed
4 years ago
1
analysis of multiple time points * 2 replicates of scRNA-seq
#138
tanasa
opened
4 years ago
0
issues re-analyzing subpopulations
#137
pdesouza27
closed
4 years ago
1
Updated references to Seurat slots
#136
jsodicoff
opened
4 years ago
0
,is this integration method suitable for data from different species on different platforms?
#135
zhurenaibobi
closed
4 years ago
1
Error in RunOptimizeALS function
#134
Abghaith
closed
4 years ago
3
About the inter-operability with Seurat
#133
tanasa
closed
4 years ago
1
STARmap data imputation code missing
#132
tabdelaal
closed
4 years ago
2
Update imputeKNN function with new algorithm
#131
skpalan
closed
4 years ago
0
runUMAP() then plotByDatasetAndCluster() returns a figure still has tsne as x and y axis names
#130
JPingLin
closed
4 years ago
1
Cluster name F3 in the walkthrough
#129
JPingLin
closed
4 years ago
1
Error in createLiger(pbmc.data) : could not find function "createLiger"
#128
JPingLin
closed
5 years ago
2
Can liger support SCTranform?
#127
zehualilab
closed
4 years ago
1
problem with install
#126
xiaoxiasummer
closed
4 years ago
2
Problem with subsetLiger
#125
JoseMMuino
closed
4 years ago
1
error in suggestLambda
#124
dhtc
closed
4 years ago
12
makeFeatureMatrix is not in the package
#123
emdann
closed
4 years ago
4
Installation error
#122
indajuan
closed
5 years ago
0
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