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wikipathways
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cytoscape-wikipathways-app
WikiPathways app for Cytoscape to open and access pathways from WikiPathways
Apache License 2.0
5
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The cellular compartment should be an annotation, not a node
#39
AlexanderPico
closed
7 years ago
1
circle arrowheads drawn too thick
#38
AlexanderPico
closed
7 years ago
4
Initial search bar usage loads broken import dialog
#37
AlexanderPico
closed
7 years ago
0
Support for AND searches
#36
AlexanderPico
closed
7 years ago
4
Sortable results table
#35
AlexanderPico
closed
7 years ago
1
Search bar returns all resutls, even if "only" one species is selected in secondary ui
#34
AlexanderPico
closed
7 years ago
5
Add support for WPID search
#33
AlexanderPico
closed
7 years ago
1
Phosphorylation and other states should be referenceable
#32
AlexanderPico
closed
7 years ago
2
Groups and complexes should be modeled as CyGroups
#31
AlexanderPico
opened
7 years ago
1
Shapes, text labels and cell compartments should be modeled as CyAnnotations
#30
AlexanderPico
closed
7 years ago
2
Organism list has odd spacing and checkmarks
#29
AlexanderPico
closed
7 years ago
4
Export to GPML
#28
AdamStuart
opened
7 years ago
2
Allow Users To Scale Preview Pane
#27
phidias51
closed
7 years ago
4
Curved and elbowed lines and angled arrowheads
#26
AlexanderPico
closed
7 years ago
5
use Maven Central for Derby
#25
egonw
closed
7 years ago
1
wikipathways import-as-pathway from command line doesn't correctly set visual style
#24
samadlotia
closed
9 years ago
0
search WP for a right click on a given node
#23
samadlotia
closed
9 years ago
1
load linked pathways with a right click menu
#22
samadlotia
closed
9 years ago
2
don't load organisms list on startup
#21
samadlotia
closed
9 years ago
0
Check with 3.2
#20
samadlotia
closed
9 years ago
0
does not work with proxy settings
#19
AlexanderPico
closed
9 years ago
2
WP networks not showing up in Control Panel
#18
samadlotia
closed
10 years ago
1
v3.1: EDT Threading Bug with GpmlReaderFactory.createReaderAndViewBuilder()
#17
mlcreech
closed
7 years ago
0
pathways do not import curved or elbow edges
#16
samadlotia
closed
7 years ago
2
In pathway search results, add button to open pathway in browser
#15
samadlotia
closed
10 years ago
1
Update client GUI
#14
samadlotia
closed
10 years ago
1
Provide Cytoscape commands for importing GPML files and WP services
#13
samadlotia
closed
10 years ago
1
Provide GpmlReaderTask instance directly from API
#12
samadlotia
closed
10 years ago
1
Fix bug to prevent network collections from having the same name
#11
samadlotia
closed
10 years ago
0
Fix bug to prevent network collections from having the same name
#10
samadlotia
closed
10 years ago
1
In GpmlReaderTask, properly implement getNetworks() and buildCyNetworkView().
#9
samadlotia
closed
10 years ago
1
Pathway deemed invalid when it should be valid
#8
samadlotia
closed
10 years ago
0
Show WP identifier in search result
#7
mkutmon
closed
10 years ago
2
Table import does not work when pathway is loaded.
#6
mkutmon
closed
10 years ago
0
Changing visual style is not possible
#5
mkutmon
closed
10 years ago
1
CytoscapeApp - Remove Commons Logging 1.0.4?
#4
mlcreech
closed
10 years ago
0
CytoscapeApp - HttpClient Should Be Updated to HttpComponents 4.x
#3
mlcreech
closed
10 years ago
1
WPClientRest.xmlRequest() Needs to Call GetMethod.releaseConnection()
#2
mlcreech
closed
10 years ago
1
CyNetworkReaderManager.getReader(InputStream,String) will never return a GpmlReaderTask as a CyNetworkReader
#1
mlcreech
closed
7 years ago
1
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