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wikipathways / pywikipathways

Python Client Package for WikiPathways
https://pywikipathways.readthedocs.io/
MIT License
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biology pathway-enrichment-analysis python wikipathways

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pywikipathways

Python Client Package for the WikiPathways API

Use this package to interface with the WikiPathways API. It provides programmatic access to WikiPathways content.

This is a Python port of rWikiPathways R (Bioconductor) package. The names of functions and their arguments are unified between the two. (However, there is a difference between a camel case and a snake case.)

This project is inspired by py4cytoscape for RCy3. Just as py4cytoscape ports RCy3 and function specifications to Python, pywikipathways also ports rWikiPathways functions to Python.

Try pywikipathways with Google Colab

Open In Colab

Installation

pip install pywikipathways

Instructions for installing the development version

  1. Install Python and pip
  2. Install Git
  3. Install the development version of pywikipathways with the following command. 
    pip install git+https://github.com/kozo2/pywikipathways.git

Documentation

https://pywikipathways.readthedocs.io