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In GitLab by @kelsey.chetnik on Jun 15, 2020, 12:23
Extend the functionality of mt_stats_pathway_enrichment.R and mt_stats_pathway_enrichment_with_differential_analysis.R. Talk to Parviz to check wha…
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- [ ] Perform analysis for each chemical on the final list of targets (compatible_genes_results).
- [ ] Check if there is overlap of enriched pathways across chemicals for each family
- [x] Run …
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Could it be used for KEGG pathway enrichment analysis of metabolites in pigs?
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**Is your feature request related to a problem? Please describe.**
I want to use omicverse to do Different Expression Analysis, but the species I studied is potato, in R language I made my own orgDB …
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Do we have any workflow for pathway enrichment analysis based on GWAS data?
Thanks.
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Dear All,
I had two questions concerning enrichment analysis and permulations.
1) With the function "fastwilcoxGMTall", is it correct to use a list of goterms and associated genes instead of pa…
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Description:
After uploading a gene counts matrix and corresponding metadata file, I performed DE analysis, then created a list of up and down scored genes. For each list I performed STRING and Wikip…
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Hello,
I have some clusters with differentially expresses genes generated using Seurat. I also have a highly curated gene list and I wish to perform enrichment analysis using these on each cluster …
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Hello,
I was using decoupleR for pathway analysis in single cell.
I tried a few lines:
```R
msigdb
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Hello members,
I am currently working with TPM expression data obtained from RNA-seq analysis, and my dataset includes a diverse range of biotypes such as miRNA, lncRNA, pseudogenes, etc., resultin…