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phyloGenerator
Automated Phylogeny Generation for Ecologists
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Potential integratedBootstrap PATHd8 interaction
#40
willpearse
opened
7 years ago
0
Server error when checking NCBI for data
#39
rossmounce
closed
7 years ago
3
Is DendroPy required as a pre-installation for the linux install?
#38
rossmounce
closed
7 years ago
3
Print version number on run-through
#37
willpearse
opened
7 years ago
0
Trim using < differentiating by gene
#36
willpearse
opened
8 years ago
0
Allow taxonID and species-name searches at the same time
#35
willpearse
opened
8 years ago
0
Do constraint trees with taxonIDs work?
#34
willpearse
opened
8 years ago
0
The paper's out...
#33
willpearse
opened
8 years ago
0
Log files output
#32
willpearse
opened
8 years ago
0
Server re-tries
#31
willpearse
opened
8 years ago
0
Crash mode
#30
willpearse
opened
8 years ago
0
Plant gene mode
#29
willpearse
opened
10 years ago
1
NCBI taxonomy checker
#28
willpearse
opened
10 years ago
0
undo mode?
#27
willpearse
opened
10 years ago
0
use referenceDownload in thorough searches, etc.
#26
willpearse
opened
10 years ago
0
APG III references
#25
willpearse
opened
10 years ago
0
Aligning empty genes
#24
willpearse
opened
10 years ago
0
Search with NCBI taxon IDs instead of species names
#23
DomBennett
closed
11 years ago
2
PATHd8 issues on Linux
#22
willpearse
closed
11 years ago
0
Allow users to enter DNA alignments, not just DNA sequences
#21
willpearse
closed
11 years ago
1
OSError: [Errno 21] Is a directory: 'standard-RAxML'
#20
rossmounce
closed
11 years ago
2
output directory must already pre-exist
#19
rossmounce
closed
11 years ago
0
Order of species placed in BEAST constraints seem to be reflected in phylogeny output
#18
willpearse
closed
11 years ago
1
Attempt to save output on exit
#17
willpearse
opened
11 years ago
0
Better constraint options
#16
willpearse
opened
11 years ago
0
renameSequences error
#15
vincentdavis
closed
11 years ago
4
Browser interface
#14
willpearse
opened
11 years ago
2
Can't unzip zip file for mac
#13
sckott
closed
11 years ago
1
Unit tests?
#12
peterjc
closed
11 years ago
5
Clarify requirements in README
#11
peterjc
closed
11 years ago
3
Interactive tests
#10
willpearse
closed
12 years ago
0
Integrate Windows and Mac Properly
#9
willpearse
closed
12 years ago
0
Reduce filesize of applications
#8
willpearse
closed
11 years ago
0
COI trimming
#7
willpearse
closed
12 years ago
0
Trim en mass according to critera
#6
willpearse
closed
12 years ago
0
Gene choice from multiple possibilities
#5
willpearse
closed
12 years ago
0
Can't deal with 'blank' genes if downloading multiple genes
#4
willpearse
closed
12 years ago
1
Use replacements from same genus if no species in GenBank
#3
willpearse
closed
12 years ago
0
Can't make constraint tree from GenBank output
#2
willpearse
closed
11 years ago
0
Controlling for phylogeny in a comparative life-history study
#1
abaxter
closed
12 years ago
2