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wslh-bio
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SPNtypeID
SPNtypeID is a Nextflow pipeline used for genome assembly and serotyping of Streptococcus pneumoniae.
GNU General Public License v3.0
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Merge dev-regex-updates to main for regex parameter and results changes for 1.6.0 update
#13
AbigailShockey
closed
5 months ago
0
Merge pull request #11 from wslh-bio/dev-regex-updates
#12
AbigailShockey
closed
6 months ago
0
Merge dev-regex-updates to main for regex parameter addition and 1.5.0 update
#11
AbigailShockey
closed
6 months ago
0
Check for empty reads in Kraken module
#10
AbigailShockey
opened
6 months ago
0
Mark untypable, coverage too low and contamination SeroBA results as QC FAIL
#9
AbigailShockey
closed
1 year ago
0
Pipeline Version Reported
#8
AbigailShockey
closed
1 year ago
0
Unit testing
#7
AbigailShockey
closed
1 year ago
1
"_T1" added to sample names somewhere in the pipeline
#6
AbigailShockey
closed
1 year ago
1
Change PASS/FAIL thresholds for coverage from 70X to 40X
#5
AbigailShockey
closed
1 year ago
1
MultiQC output and results output not present in outdir
#4
AbigailShockey
closed
1 year ago
1
Dev Merge
#3
AbigailShockey
closed
2 years ago
0
Dev merge to Main
#2
AbigailShockey
closed
2 years ago
0
Error if non-SPN reads are run
#1
garfinjm
closed
2 years ago
1