wtmatlock flanker issues

wtmatlock / flanker

Gene-flank analysis tool

MIT License

25 stars 6 forks source link

issues

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Question about Flanker Docs

#57 haruosuz opened 1 year ago
13
Failed to install Flanker

#56 haruosuz closed 1 year ago
7
Moving to BLAST

#54 wtmatlock opened 1 year ago
0
FASTA files of flanking sequences are deleted by default in clustering mode

#53 pcrxn opened 2 years ago
1
Unable to update Abricate; issues after trying

#52 kringwa2 closed 2 years ago
1
Conda installation broken by abricate dependency

#51 bede opened 2 years ago
8
Dependency problems since Conda update

#50 nenadmacesic closed 2 years ago
2
Flanker doesn't handle multi-copy genes

#49 samlipworth opened 2 years ago
1
using draft assemblies?

#48 jpaganini closed 3 years ago
1
Default flank behaviour for reverse complemented sequences

#47 LeahRoberts closed 3 years ago
4
0.1.5

#46 wtmatlock closed 3 years ago
0
Check matching FASTA header on ID, not description

#45 embatty closed 3 years ago
1
Improve testing

#44 wtmatlock opened 3 years ago
2
ERROR: Gene not found in sequence. Can i add custom database? . short contigs and --window option

#43 Leytoncito closed 3 years ago
2
Optionally run until no more clusters found

#42 samlipworth opened 3 years ago
0
Citation info

#41 wtmatlock closed 3 years ago
0
Closest match mode

#40 wtmatlock closed 3 years ago
0
More robust querying

#39 wtmatlock closed 3 years ago
0
Deal with messy multi fasta headers

#38 samlipworth closed 3 years ago
3
Tests with CI, packaging stuff, docs

#37 bede closed 3 years ago
0
CI with Github Actions

#36 bede closed 3 years ago
1
Create LICENSE

#35 samlipworth closed 3 years ago
0
Add files via upload

#34 samlipworth closed 3 years ago
0
Sense

#33 samlipworth closed 3 years ago
0
Sense

#32 samlipworth closed 3 years ago
0
Parallelise abricate when supplied multifasta

#31 bede opened 3 years ago
0
Gene query naming

#30 wtmatlock closed 3 years ago
5
Error if gene is not annotated (gene_sense)

#29 wtmatlock closed 3 years ago
2
Check mash subprocesses complete, remove unused dep

#28 bede closed 3 years ago
0
Sense

#27 samlipworth closed 3 years ago
0
sort sense issue

#26 samlipworth closed 3 years ago
0
Abricate query matching

#25 wtmatlock closed 3 years ago
1
Fasta header naming

#24 wtmatlock closed 3 years ago
1
Left/right renaming

#23 wtmatlock closed 3 years ago
0
Reverse complements

#22 wtmatlock closed 3 years ago
0
Packaging and testing

#21 bede closed 3 years ago
2
Refactor merge

#20 samlipworth closed 3 years ago
1
Refactor

#19 wtmatlock closed 3 years ago
0
Multiple annotations of same gene

#18 wtmatlock closed 3 years ago
0
Add left/right functionality

#17 samlipworth closed 3 years ago
0
Only run abricate once part 2

#16 samlipworth closed 3 years ago
0
only run abricate once 2

#15 samlipworth closed 3 years ago
0
Development

#14 wtmatlock closed 3 years ago
0
Only run abricate once

#13 samlipworth closed 3 years ago
0
Don't re-run abricate for each window length

#12 samlipworth closed 3 years ago
0
Feature branch

#11 wtmatlock closed 3 years ago
0
Feature branch

#10 samlipworth closed 3 years ago
0
update graphs script

#9 samlipworth closed 3 years ago
0
help given by default

#8 wtmatlock closed 3 years ago
0
default arguments fixed

#7 wtmatlock closed 3 years ago
0