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wurmlab
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flo
Same species annotation lift over pipeline.
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make install.sh script take parameters
#46
photocyte
opened
1 year ago
0
Issue a release & publish on Bioconda?
#45
photocyte
opened
1 year ago
1
Update install.sh
#44
Npaffen
closed
1 year ago
0
install.sh fails with a make error for libgenometoools.so
#43
Npaffen
closed
1 year ago
2
GFF format issue with CoGe input
#42
splaisan
opened
1 year ago
0
cc command not found
#41
RNAseqer
closed
2 years ago
1
Expecting number line ERROR
#40
matoller
closed
2 years ago
2
undefined method `last' for nil:NilClass (NoMethodError)
#39
Huangyizhong
opened
3 years ago
0
add shebang to scripts/install.sh
#38
cmatKhan
closed
3 years ago
1
gff_recover error
#37
cmatKhan
opened
3 years ago
4
Error when blat begins
#36
14zac2
opened
3 years ago
5
Syntax issue with rake
#35
14zac2
closed
3 years ago
2
file "-" does not contain 9 tab (\t) separated fields
#34
elcortegano
closed
3 years ago
7
flo failed on Large genome
#33
pan-genome
opened
4 years ago
9
Flo failed at the GenomTools section
#32
Homap
closed
3 years ago
3
Workflow manager?
#31
photocyte
closed
3 years ago
1
flo compilation error
#30
El-Castor
closed
3 years ago
1
mitochondrial genes
#29
olechnwin
closed
3 years ago
3
gt gff3: error: Parent ... was not defined (via "ID=")
#28
mictadlo
closed
3 years ago
6
Present as a set of scripts
#27
yeban
opened
5 years ago
0
liftover gtf file
#26
olechnwin
closed
3 years ago
1
gt gff3 error
#25
bhavnah
closed
3 years ago
7
custom output folder
#24
lassancejm
closed
5 years ago
1
faToTwoBit: cannot execute binary file
#23
divyanandu
closed
6 years ago
5
Naming & moving data
#22
yannickwurm
opened
6 years ago
0
flo result input to EVM?
#21
yplee614
closed
3 years ago
1
Results and discussion
#20
mictadlo
closed
3 years ago
3
rake aborted
#19
mictadlo
closed
6 years ago
1
`foreach': no implicit conversion of nil into String (TypeError
#18
mictadlo
closed
6 years ago
4
Encountering error running flo at early 'faSplit' step:
#17
rtraborn
closed
3 years ago
3
Should check if lifted.gff is empty and quit gracefully
#16
yeban
closed
6 years ago
0
error at end of process
#15
splaisan
closed
6 years ago
6
collision between gene names using a merge of two genome GFF files
#14
splaisan
closed
6 years ago
0
Trying to map over gff results error
#13
cmdcolin
closed
7 years ago
2
Problem with temporary GFF file
#12
blackFirefly
closed
7 years ago
12
running rake fails
#11
splaisan
closed
7 years ago
0
running rake
#10
splaisan
closed
7 years ago
1
expecting number line 38 of gff3
#9
olechnwin
closed
7 years ago
1
Not processing gff
#8
pgonzale60
closed
7 years ago
2
Redefine sh to exit more gracefully if command not found.
#7
yeban
opened
7 years ago
2
Rakefile issue
#6
kbrevs
closed
7 years ago
4
Rakefile error when attempting to run flo
#5
sessmurda
closed
7 years ago
1
NoMethodError: undefined method `last' for nil:NilClass
#4
muol
closed
7 years ago
4
flo does not work if run with '-qMask' blat option is included in the .yaml file
#3
TakashiKoyama
opened
8 years ago
5
Two minor fixes in install script
#2
philippbayer
closed
8 years ago
1
has this been tested?
#1
yannickwurm
closed
9 years ago
1