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wwood
/
kingfisher-download
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
https://wwood.github.io/kingfisher-download
GNU General Public License v3.0
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[Question] Does --stdout stream the entire download process?
#39
jolespin
opened
1 month ago
1
The downloaded fq file using ena-ftp is missing base values.
#38
Dx-wmc
opened
3 months ago
2
Ena-ascp download gives 'Deprecated peer license' error
#37
mdehollander
closed
5 months ago
3
[Question] How to download directly to S3 bucket?
#36
jolespin
closed
5 months ago
8
Feature Request: annotate samples using Sample Accession
#35
nicolo-tellini
closed
6 months ago
3
Unexpected behavior when downloading fastq using SRA identifier
#34
jolespin
opened
8 months ago
3
Option to set the output directory
#33
mbhall88
closed
8 months ago
6
Feature Request: ignore error term
#32
slbai01
opened
10 months ago
1
Feature Request: support sralite format.
#31
slbai01
opened
10 months ago
1
ENA-FTP download aborted
#30
jknp
closed
10 months ago
4
kingfisher executable file not found in $PATH in Singularity
#29
JonathonMifsud
closed
11 months ago
6
Allow multiple bioproject ids in input
#28
AroneyS
closed
11 months ago
1
SRA metadata additions: Added 4 more output values to 'annotate' mode
#27
shodgkins
closed
1 year ago
2
ASCP FAILED
#26
AssumeAssume
closed
11 months ago
2
AttributeError: 'float' object has no attribute 'split'
#25
Johnsonzcode
closed
1 year ago
2
How split files in Kingfisher get download process?
#24
GuohuaZhu
closed
11 months ago
3
kingfisher annotate error when accession has a blank attribute
#23
AroneyS
closed
1 year ago
3
updated link to biostars/aspera setup tutorial
#22
ATpoint
closed
2 years ago
2
Add `extern` to PyPI dependencies
#21
jolespin
closed
2 years ago
1
Could you make a bioconda package, please
#20
SilasK
closed
1 year ago
3
ena-ascp fails with ascp v4.2
#19
xvazquezc
closed
2 years ago
1
Get .sra files without convertion
#18
FionaMoon
closed
2 years ago
1
Method ena-ascp ena-ftp failed
#17
ShailNair
closed
11 months ago
8
install kingfisher on m1 MacBook Pro
#16
Guanxin1996
closed
2 years ago
3
Added cloud version implemented in Google Colaboratory
#15
MakeTheBrainHappy
closed
2 years ago
3
Installing with kingfisher.yaml leads to aria2c issue + fix
#14
1onic
closed
2 years ago
3
Feature request: allow downloading from GSA
#13
soungalo
opened
2 years ago
3
Does not work with python3.9
#12
harper357
closed
3 years ago
4
kingfisher error
#11
yuzhenpeng
closed
3 years ago
4
With setup
#10
rhysnewell
closed
3 years ago
1
Failed to authenticate
#9
a00101
closed
11 months ago
12
No FTP download URLs found for run error
#8
jolespin
closed
4 years ago
6
SRA API change
#7
Rkubinski
closed
4 years ago
2
No FTP download URLs found
#6
JonathonMifsud
closed
4 years ago
2
Added --forward-only and --reverse-only
#5
jolespin
closed
4 years ago
1
Help on getting this to work
#4
jolespin
closed
4 years ago
8
Failed to Authenticate
#3
Rkubinski
closed
4 years ago
16
Edit to fix index out of range for single URL
#2
JamieCFreeman
closed
4 years ago
3
check completness
#1
SilasK
closed
4 years ago
1