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beast-mcmc
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Tracer BSR panel print command semi hangs (Linux)
#45
GoogleCodeExporter
closed
9 years ago
0
Recent change (svn commit 773) breaks Beauti
#44
GoogleCodeExporter
closed
9 years ago
2
treeTraceAnalysis fails due to comment in newick importer
#43
GoogleCodeExporter
closed
9 years ago
1
LogCombiner - burnin value not used unless table editing is finished
#42
GoogleCodeExporter
closed
9 years ago
1
Command-line TreeAnnotator wasn't accepting user target trees
#41
GoogleCodeExporter
closed
9 years ago
2
TreeAnnotator produces misleading medians and HPDs when calculated from only 1 tree.
#40
GoogleCodeExporter
closed
9 years ago
3
seed of 0 (zero) fails
#39
GoogleCodeExporter
closed
9 years ago
1
If partitions are unlinked then the base frequencies should be calculated from each partition separately
#38
GoogleCodeExporter
closed
9 years ago
4
The posterior probability limit box in TreeAnnotator 1.4.6
#37
GoogleCodeExporter
closed
9 years ago
3
expansion model numerical integration
#36
GoogleCodeExporter
closed
9 years ago
2
BEAUti hangs putting large number for lognormal prior mean
#35
GoogleCodeExporter
closed
9 years ago
1
Tracer: Hangs when a trace contains NaN
#34
GoogleCodeExporter
closed
9 years ago
2
Tracer: Doesn't read scientific notation log files
#33
GoogleCodeExporter
closed
9 years ago
2
BEAUti adds a constraint to every taxon sets
#32
GoogleCodeExporter
closed
9 years ago
1
Taxon sets not being properly loaded from templates
#31
GoogleCodeExporter
closed
9 years ago
1
BEAUti - some prior plots not displayed properly
#30
GoogleCodeExporter
closed
9 years ago
1
Bug in AlignmentParser prevents the use of general data types
#29
GoogleCodeExporter
closed
9 years ago
1
Prior table not updates when tree prior is changed in BEAUti
#28
GoogleCodeExporter
closed
9 years ago
1
exception in tracer (development source)
#27
GoogleCodeExporter
closed
9 years ago
1
offset seems to be ignored for exponentialPriors
#26
GoogleCodeExporter
closed
9 years ago
2
BEAST ignores the offset value in an exponential prior
#25
GoogleCodeExporter
closed
9 years ago
1
BEAUti ignores the offset value given for gamma priors
#24
GoogleCodeExporter
closed
9 years ago
1
TMRCA constraint fails with a taxa set which is a union of other sets
#23
GoogleCodeExporter
closed
9 years ago
1
Taxa set table is sorted alphabetically but monophyly choices are not
#22
GoogleCodeExporter
closed
9 years ago
1
Error checking for compatible monophyly in BEAUti
#21
GoogleCodeExporter
closed
9 years ago
1
Error reporting when parsing XML
#20
GoogleCodeExporter
closed
9 years ago
1
Setting lognormal priors in real-space
#19
GoogleCodeExporter
closed
9 years ago
1
Tracer hangs on large trace files
#18
GoogleCodeExporter
closed
9 years ago
3
BSP options don't disappear when a different tree prior is selected in BEAUti
#17
GoogleCodeExporter
closed
9 years ago
1
Forwards/Backwards date selection becoming corrupted in BEAUti
#16
GoogleCodeExporter
closed
9 years ago
2
getDemographic method in PiecewiseLinearPopulation was returning the wrong value
#15
GoogleCodeExporter
closed
9 years ago
1
Null-Pointer Exception when a Newick tree doesn't finish with a ';' (semicolon)
#14
GoogleCodeExporter
closed
9 years ago
2
BEAUTi provides no simple way to run an analysis without data
#13
GoogleCodeExporter
closed
9 years ago
1
BEAUTi does not generate a valid starting tree when hard bounds on some nodes are specified in the prior
#12
GoogleCodeExporter
closed
9 years ago
1
x86 platform giving RESTORE failure error with some files
#11
GoogleCodeExporter
closed
9 years ago
4
The exponential prior code sends mean rather than rate to ExponentialDistribution constructor!
#10
GoogleCodeExporter
closed
9 years ago
1
Need to exclude src/org/virion/jam/maconly directory from build under Linux
#9
GoogleCodeExporter
closed
9 years ago
1
LogCombiner incorrectly assumes taxon order is the same when combining tree files
#8
GoogleCodeExporter
closed
9 years ago
1
ESS and ACT code not shared between Tracer and LogAnalyzer
#7
GoogleCodeExporter
closed
9 years ago
1
Can't set group count for skyline plot in BEAUti
#6
GoogleCodeExporter
closed
9 years ago
1
Guess dates bug in BEAUti 1.4
#5
GoogleCodeExporter
closed
9 years ago
1
Feature request: Exponential Bayesian Skyline
#4
GoogleCodeExporter
opened
9 years ago
0
Null pointer registering datatypes
#3
GoogleCodeExporter
closed
9 years ago
1
Fix all compiler warning messages
#2
GoogleCodeExporter
closed
9 years ago
3
Source repository is messed up with java files in the bin directory
#1
GoogleCodeExporter
closed
9 years ago
1