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yanailab
/
celseq2
Generate the UMI count matrix from CEL-Seq2 sequencing data
https://yanailab.github.io/celseq2/
BSD 3-Clause "New" or "Revised" License
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Missing input files for rule COOK_ANNOTATION:
#46
iichelhadi
opened
1 year ago
1
count matrix outputted with all zeros
#45
rayajallad
opened
1 year ago
0
RuleException: ContextualVersionConflict in line 520 of /path-to/celseq2_beta.snakemake:
#44
parichitran
opened
2 years ago
0
ERROR: Error in rule COOK_ANNOTATION:
#43
YAOJ-bioin
opened
3 years ago
1
installation issues
#42
tapas83
opened
3 years ago
2
plotly vs xlmhg version conflict
#41
mthang
opened
4 years ago
2
ImportError: cannot import name 'snakemake'
#40
dwkarjosukarso
opened
4 years ago
1
demo data in CEL-Seq2
#39
yueli8
closed
4 years ago
7
python version and pandas error
#38
katieemelianova
closed
4 years ago
1
lincRNA instead of lncRNA
#37
JGASmits
closed
4 years ago
1
UMI count matrix > 384?
#36
JGASmits
closed
4 years ago
5
keep cell sam files
#35
JGASmits
closed
4 years ago
2
missing output file
#34
YOU-k
closed
4 years ago
2
TypeError: snakemake() got an unexpected keyword argument 'configfile'
#33
YOU-k
closed
4 years ago
5
Reference Genome Option for Star
#32
tbeaux18
closed
4 years ago
1
Database used here
#31
jfouret
opened
5 years ago
1
count table with geneIDs instead than EnsemblID
#30
francescarivello
closed
4 years ago
2
installation error - ftputil, pyasn1-modules
#29
Puriney
closed
5 years ago
1
question: htseq-count stranded?
#28
mdhe1248
closed
5 years ago
1
Pipeline install fails to build datrie
#27
jwtobias
closed
5 years ago
1
checking parameters and file path
#26
Puriney
opened
5 years ago
0
Re: Error in rule summarize_umi_matrix_per_experiment
#25
mdhe1248
closed
6 years ago
2
question: updating celseq2 (0.5.2 -> 0.5.3)?
#24
mdhe1248
closed
6 years ago
3
update
#23
Puriney
closed
6 years ago
0
v0.5.3
#22
Puriney
closed
6 years ago
0
MissingInputException and Missing input files
#21
mdhe1248
closed
6 years ago
2
Re: ParseError
#20
mdhe1248
closed
6 years ago
1
v0.5.2-b
#19
Puriney
closed
6 years ago
0
v0.5.2
#18
Puriney
closed
6 years ago
0
0.5.1
#17
Puriney
closed
6 years ago
0
0.4.8
#16
Puriney
closed
6 years ago
0
Release 0.4.7
#15
Puriney
closed
6 years ago
0
:muscle: robust design of workflow
#14
Puriney
closed
6 years ago
0
celseq2-to-st understands CSV
#13
Puriney
closed
6 years ago
0
:cn: Upgrade to 0.4.6
#12
Puriney
closed
6 years ago
0
:feet: improve celseq2-to-st
#11
Puriney
closed
6 years ago
0
Question: Changing option values in the pipeline
#10
mdhe1248
closed
6 years ago
2
:dog: :book: fix broken links on README
#9
Puriney
closed
6 years ago
0
:cn: v0.4.3 improve pipeline design to avoid STAR memory over usage
#8
Puriney
closed
6 years ago
0
:cn: v0.4.2 improve pipeline design to avoid silent pre-inhibition
#7
Puriney
closed
6 years ago
0
Link break
#6
mdhe1248
closed
6 years ago
1
Plan to delete ST branch after one week
#5
Puriney
closed
6 years ago
0
Merge features supporting ST
#4
Puriney
closed
7 years ago
0
prepare Excel-like report on bowtie2's log
#3
Puriney
closed
6 years ago
0
expose feature_atrr and feature_type option to config
#2
Puriney
closed
7 years ago
0
Add strand='rev' option to count-umi
#1
Puriney
closed
7 years ago
0