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MISO
MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation
http://genes.mit.edu/burgelab/miso/index.html
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Extraction of splicing events from user speficied gene annotation (gtf or gff)
#101
akesarwani
closed
7 years ago
1
MISO, new update ?
#100
lmanchon
opened
7 years ago
0
Update sashimi.rst
#99
kerkomen
opened
7 years ago
0
IndexError when summarizing and comparing MISO results
#98
althornt
closed
7 years ago
8
Status of conda package?
#97
holtgrewe
opened
7 years ago
2
Batch-logs file not being created
#96
hershbc
opened
7 years ago
2
Error: need --output-dir to compute Psi values.
#95
pillailab
closed
8 years ago
1
Variable Read Length
#94
dlukacso
opened
8 years ago
0
TypeError
#93
lpipes
opened
8 years ago
0
Best-guessing insert size and stddev using paired-end data versus running miso single ended
#92
fpbarthel
opened
8 years ago
2
MISO test run failed !
#91
ya73
opened
8 years ago
5
Parse command string
#90
dlsrnsi
opened
8 years ago
1
All isoforms shorter than read length 150,always skipping
#89
john321123
closed
8 years ago
0
Slurm support
#88
aaronk
opened
8 years ago
1
Adjust Max y-axis for sashimi_plot
#87
cfbuenabadn
opened
8 years ago
0
Slurm support
#86
aaronk
opened
8 years ago
20
Update setup.py
#85
aaronk
closed
8 years ago
5
How are indels, soft-clipping in CIGAR handled? Affected by read length?
#84
SolKatzman
opened
8 years ago
0
Compiling fastmiso on mac (can't find 'miso' / 'index_gff' / 'sashami_plot' executables)
#83
cwarden45
closed
8 years ago
1
strand_rule error
#82
dauss75
closed
8 years ago
1
Does the insert length mean fragment length?
#81
huangyh09
closed
8 years ago
2
Issue with psi values in miso files
#80
ryanabo
opened
9 years ago
2
Fix misnamed logger variable
#79
jrbotros
closed
8 years ago
1
fix import statement setup.py, required because entry_points is used
#78
boegel
closed
8 years ago
6
Pairedbug
#77
gaborcsardi
closed
9 years ago
1
unpack miso output for sashimi_plot
#76
pengchy
opened
9 years ago
8
running multiple miso jobs ( one per sample ) independently using an index, fails as shelves are not built for concurrent reads
#75
xshah
opened
9 years ago
9
changelog
#74
olgabot
closed
9 years ago
1
Use Travis CI
#73
yarden
closed
7 years ago
7
License unclear
#72
rekado
closed
9 years ago
1
building with python 3 fails
#71
rekado
closed
9 years ago
2
spawned python processes
#70
ink1
opened
9 years ago
1
Cannot load misopy after installing to staged python 2.7 location using pip
#69
kotoroshinoto
closed
10 years ago
2
Error on provided drosophila annotations
#68
ohadgl
opened
10 years ago
0
MISO on MAC 10.9: malloc error
#67
Jerry-Zhao
opened
10 years ago
5
run_SGEarray_cluster() throws error in SGE-6.0u8. Possibly qsub priority bug.
#66
jakeyeung
opened
10 years ago
0
annotation file
#65
nickytong
opened
10 years ago
0
log_score = nan?
#64
olgabot
opened
10 years ago
8
Reproducibility of Miso results
#63
robcarr
opened
10 years ago
1
Reads thrown out?
#62
olgabot
opened
10 years ago
5
Creating new AS annotation
#61
ramaniak
closed
10 years ago
1
Properly paired on tophat output
#60
frontal
closed
10 years ago
3
Add python shebang to the top
#59
roryk
opened
11 years ago
10
Creating my own gff3 file
#58
frontal
closed
10 years ago
1
No query here. solved by myselft :) can be deleted
#57
frontal
closed
10 years ago
0
Problem with assigned_counts
#56
mnsmar
closed
8 years ago
3
GFF IDs don't correspond to exon start/stops
#55
olgabot
opened
11 years ago
2
Add `which_miso`
#54
yarden
opened
11 years ago
0
Error checking for tagBam
#53
yarden
opened
11 years ago
0
Fix Python version path issue
#52
yarden
closed
10 years ago
0
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