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fuma
:dash::leopard: FuMa: reporting overlap in RNA-seq detected fusion genes
GNU General Public License v3.0
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Fix bug when GTF line has no gene/transcript id
#50
Redmar-van-den-Berg
closed
6 months ago
1
Merge the changes to use Python3 to master
#49
Redmar-van-den-Berg
closed
3 years ago
0
Make FuMa work with Python3
#48
Redmar-van-den-Berg
closed
3 years ago
2
PyPI requires a valid author email, or none at all
#47
Redmar-van-den-Berg
closed
3 years ago
0
python2 -> python3
#46
yhoogstrate
closed
3 years ago
0
v3.0.7
#45
yhoogstrate
closed
3 years ago
3
Fix issue 43
#44
Redmar-van-den-Berg
closed
3 years ago
4
FuMa crashes on empty fusion file
#43
Redmar-van-den-Berg
closed
3 years ago
0
changes to support arriba
#42
yhoogstrate
closed
4 years ago
0
Pizzly support
#41
mblue9
closed
6 years ago
2
Problem running the Tophat Fusion Pre (fusions.out) results
#40
KeyTals
closed
7 years ago
5
FusionCatcher Error
#39
KeyTals
closed
7 years ago
3
Pypi compatibility updates
#38
yhoogstrate
closed
7 years ago
1
[WIP] Python3 compatiblity (excl. HTSeq)
#37
yhoogstrate
closed
8 years ago
0
FuMa compatibility changes
#36
yhoogstrate
closed
8 years ago
0
Porting to Python 3
#35
bow
closed
7 years ago
2
Suppresses a warning for certain installations
#34
yhoogstrate
closed
8 years ago
0
Minor changes that have no impact on the function
#33
yhoogstrate
closed
8 years ago
0
Refactored code
#32
yhoogstrate
closed
8 years ago
1
Bugfix
#31
yhoogstrate
closed
8 years ago
0
Removal unused trans seq vars
#30
yhoogstrate
closed
8 years ago
0
Changed verbosity settings
#29
yhoogstrate
closed
8 years ago
1
Another reduction of memory footpint
#28
yhoogstrate
closed
8 years ago
0
Huge reduction of memory footprint
#27
yhoogstrate
closed
8 years ago
0
memory overload
#26
yhoogstrate
closed
8 years ago
0
Some mem reduction steps
#25
yhoogstrate
closed
8 years ago
0
More reduction of memory usage
#24
yhoogstrate
closed
8 years ago
0
Additional comment
#23
yhoogstrate
closed
8 years ago
0
Added utility for GTF to BED conversion
#22
yhoogstrate
closed
8 years ago
0
Reduction of memory footprint
#21
yhoogstrate
closed
8 years ago
0
JAFFA format support
#20
NoeGeno
closed
8 years ago
2
--format="extensive" not working
#19
yhoogstrate
closed
8 years ago
0
Minor change in Readme (description for SOAPFuse and EricScript)
#18
yhoogstrate
closed
8 years ago
1
Fixes support for EricScript, installation numpy & exception handling
#17
yhoogstrate
closed
8 years ago
0
Support for SOAPFuse and EricScript
#16
yhoogstrate
closed
8 years ago
0
Readme: minor update adding URL to CG format specification
#15
yhoogstrate
closed
8 years ago
0
Soapfuse format support
#14
avkitex
closed
8 years ago
15
Changes to relative bedpe conversion
#13
yhoogstrate
closed
8 years ago
0
Small fix that allows CG files to have empty strand column
#12
yhoogstrate
closed
8 years ago
0
Small changes to the utilities and the export-to CG function
#11
yhoogstrate
closed
8 years ago
0
Small update for printing Fusion genes (Only affects API/dev)
#10
yhoogstrate
closed
8 years ago
0
Strand specific default off long genes column
#9
yhoogstrate
closed
8 years ago
0
Installation fails but still creates binary when numpy is missing
#8
yhoogstrate
closed
8 years ago
1
v2.10.1: fix for list output (1 tab at each line too much)
#7
yhoogstrate
closed
9 years ago
0
v2.10.0 (many changes)
#6
yhoogstrate
closed
9 years ago
0
Support for StarFusion format
#5
yhoogstrate
closed
9 years ago
0
Correct version number
#4
yhoogstrate
closed
9 years ago
0
Version 2.9.1: Support for Chimera prettyPrint format
#3
yhoogstrate
closed
9 years ago
0
Stranded fusions
#2
yhoogstrate
closed
9 years ago
0
Complex subset problem with n > 2 datasets
#1
yhoogstrate
closed
9 years ago
1
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