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zhanglab-aim
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cancer-net
Diagnosing cancers using deep learning.
GNU General Public License v2.0
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PNET Demo
#37
Muedi
opened
2 months ago
0
Split datasets into pytorch and pyg datasets, add brain data
#36
Chris-Pedersen
closed
4 months ago
2
Is the development done?
#35
Chan-Hee
opened
10 months ago
2
More housekeeping for release
#34
Chris-Pedersen
closed
10 months ago
1
Changes for code release
#33
Chris-Pedersen
closed
11 months ago
0
Update graph models
#32
Chris-Pedersen
closed
1 year ago
0
Make torch impl of pnet similar to TF (mostly from Frank)
#31
ttesileanu
closed
1 year ago
0
change init method for torch pnet
#30
zj-zhang
closed
1 year ago
0
Fix get_roc, issues w/ newer lib vers, env, formatting
#29
ttesileanu
closed
1 year ago
0
Unify single and multiple-layer MetaLayer models
#28
Chris-Pedersen
closed
1 year ago
0
Pnet torch notebook
#27
Chris-Pedersen
closed
1 year ago
1
Add sampler for deterministic sampling of test set
#26
Chris-Pedersen
closed
1 year ago
1
Notebook comparing predictions from different models
#25
Chris-Pedersen
closed
1 year ago
0
Add intermediate layer outputs in torch pnet
#24
Chris-Pedersen
closed
1 year ago
0
Fix issue with sparse tensors by using pyg 2.0
#23
ttesileanu
closed
1 year ago
0
Fix CUDA dependencies (and remove optuna)
#22
ttesileanu
closed
1 year ago
0
Fix environment yml, fix error with newer Pandas
#21
ttesileanu
closed
1 year ago
0
Changed pandas and torch version in environment file
#20
Chris-Pedersen
closed
1 year ago
3
Further attempt to reduce val fluctuations; rerun vgnn nb
#19
ttesileanu
closed
2 years ago
0
Fix validation-score issues; add watermark dependency
#18
ttesileanu
closed
2 years ago
0
Fix get_roc, add VgnNet to arch namespace
#17
ttesileanu
closed
2 years ago
0
Tensorflow and PyTorch PNet; sparse-pooling GCN
#16
zj-zhang
closed
2 years ago
0
Added some base wandb scripts
#15
Chris-Pedersen
closed
1 year ago
0
ModuleNotFoundError: No module named 'cancernet.pnet.config_path'
#14
zj-zhang
closed
2 years ago
0
Fix #12: scatter_add returns flat tensor
#13
ttesileanu
closed
2 years ago
0
scatter_nd returns flat vector
#12
zj-zhang
closed
2 years ago
0
Add investigate_edges nb after finishing run
#11
ttesileanu
closed
2 years ago
0
Update README
#10
ttesileanu
closed
2 years ago
0
Refactor to package; start using PytorchLightning; remove crud
#9
ttesileanu
closed
2 years ago
0
Dev
#8
zj-zhang
closed
2 years ago
1
Notebook to investigate edge features
#7
Chris-Pedersen
closed
2 years ago
0
Add Reactome pathway code
#6
Chris-Pedersen
closed
2 years ago
0
Visible graph for prostate data
#5
Chris-Pedersen
closed
2 years ago
2
Hyperparam optimization using Optuna
#4
ttesileanu
closed
2 years ago
0
Add pnet code from Frank
#3
ttesileanu
closed
2 years ago
0
Prostate metalayer
#2
Chris-Pedersen
closed
2 years ago
0
Add GCN on prostate data from pnet
#1
zj-zhang
closed
2 years ago
0