10XGenomics vartrix issues

10XGenomics / vartrix

Single-Cell Genotyping Tool

MIT License

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issues

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Bump ordered-float from 1.0.2 to 1.1.1

#77 dependabot[bot] closed 1 year ago
2
Bump smallvec from 0.6.10 to 0.6.14

#76 dependabot[bot] closed 1 year ago
1
Bump openssl-src from 111.10.2+1.1.1g to 111.20.0+1.1.1o

#75 dependabot[bot] closed 2 years ago
1
Bump crossbeam-deque from 0.7.1 to 0.7.4

#74 dependabot[bot] closed 1 year ago
1
Unequal number of reference reads

#73 grasshoffm opened 2 years ago
4
[ERROR] Sequence 1 not seen in FASTA

#72 rohankodgule closed 2 years ago
2
Coverage of reads when using umi mode

#71 korakusa opened 2 years ago
1
Can one include this software into a nextflow pipeline?

#70 stela2502 closed 2 years ago
1
Support bgzip fasta file

#69 timoast opened 2 years ago
0
Out of Memory Error for MT library

#68 grasshoffm opened 2 years ago
0
error of vcf format

#67 songeric1107 opened 2 years ago
1
vartrix Crash Report

#66 sanchezy closed 2 years ago
2
hello.How to judge the validity of the results? The results I run are completely different from those of cellSNP-Lite

#65 liudagehhhhhh closed 3 years ago
0
VarTrix calls reference reads in a cell line that does not contained reference reads

#64 dcruz5h opened 3 years ago
0
What does consensus value equals to 2 mean?

#63 mzhang0215 opened 3 years ago
0
Unable to use the tool

#62 adhisadi closed 2 years ago
3
Do not transpose snv_matrix in the vignette

#61 stephenwilliams22 closed 3 years ago
0
Calling the same physical positions between sequencing runs

#60 gertzem opened 3 years ago
3
vartrix drops barcodes so that output files can no longer be linked to the original barcodes

#59 ejvandenoord opened 3 years ago
2
No alt reads for called SNPs

#58 grasshoffm opened 3 years ago
0
Best strategy for non-coding variants

#57 RegnerM2015 opened 3 years ago
0
Genotyping cancer cells (non-diploid)

#56 RegnerM2015 closed 3 years ago
1
Crash report

#55 Ping-lin14 closed 3 years ago
0
Cell number differ between input and output

#54 MagpiePKU closed 3 years ago
11
Error in VCF format ?

#53 atourneu opened 4 years ago
3
Error writing out-matrix

#52 sylvia-science closed 4 years ago
1
MacOS Binary

#51 rschauner closed 4 years ago
1
Thank you @pmarks, I just tried to delete the entire source file and download from release page again, after I run cargo test --release, I could not compile the new source file. The error goes as following:

#50 Antioxidantcoco closed 4 years ago
1
Generating VCF File

#49 sahh04 closed 4 years ago
1
Error on compiling on source

#48 Antioxidantcoco closed 4 years ago
2
vartrix crashes with "assertion failed: col < self.cols"

#47 gokceneraslan closed 4 years ago
2
Error in VCF format?

#46 xiweiwu opened 4 years ago
1
Error starting VarTrix

#45 michelgw closed 4 years ago
10
add to meta data on seurat

#44 ahdee closed 4 years ago
0
discrepancy between alt_frac and coverage methods

#43 igordot opened 4 years ago
1
Use the 10x toolchain Docker image

#42 sjackman closed 4 years ago
3
output matrix alt_frac mode NaNs

#41 igordot opened 4 years ago
0
try and build in toolchain

#40 pmarks closed 4 years ago
0
pre-compiled binaries

#39 igordot closed 4 years ago
6
Compile issue

#38 moravveji closed 4 years ago
6
About the [ERROR]: The resulting matrix has a sum of 0.

#37 WeiZhu1998 closed 4 years ago
13
work with 2-strain vcf

#36 CarnoZhao closed 5 years ago
3
Is there any way to speed the program?

#35 YiweiNiu closed 5 years ago
7
the problem of Installation

#34 crystal0721 closed 5 years ago
1
Annotation of no called, ref/ref, alt/alt, and alt/ref

#33 zezhuo closed 5 years ago
1
'Number of alignments skipped due to not being useful'

#32 Puriney closed 5 years ago
1
Would be number of UMIs for '--umi' with '--scoring-method coverage'?

#31 Puriney closed 5 years ago
1
Any manuscript to further elaborate on how vartrix works in details?

#30 Puriney opened 5 years ago
0
crash reports

#29 ruqianl closed 5 years ago
8
option for no smith-waterman in the case of only looking at snps and speed issues with many 0 depth loci

#28 wheaton5 opened 5 years ago
7

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