4dn-dcic hic2cool issues

4dn-dcic / hic2cool

Lightweight converter between hic and cool contact matrices.

MIT License

67 stars 7 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Bump setuptools from 68.2.2 to 70.0.0

#71 dependabot[bot] opened 4 months ago
0
Bump zipp from 3.17.0 to 3.19.1

#70 dependabot[bot] opened 4 months ago
0
Add support for HIC v9 files, weight column and bump version

#69 VonAlphaBisZulu opened 6 months ago
2
How to specify multiple resolutions in the output file of mcool

#68 usernicai opened 9 months ago
0
Restore command line usage and update documentation, bump version

#67 clarabakker closed 1 year ago
0
Convert to poetry, update versions of all libraries

#66 clarabakker closed 1 year ago
0
hic2cool update is not compatible with write permissions on h5py 3.6.9

#65 Kelly-ST-HRI closed 1 year ago
0
Allow hic2cool_updates.py to write output files

#64 Kelly-ST-HRI closed 1 year ago
11
No weight column in the converted .mcool file

#63 nikhilp11 opened 1 year ago
1
HOW to get cool files only with KR normalization

#62 jiangshan529 opened 1 year ago
0
error: object header message is too large

#61 gabrielluishernandez opened 2 years ago
1
New .hic format

#60 sa501428 opened 2 years ago
1
hic2cooler not working with hic v9 formatting from Juicer v2

#59 tonyjhlam opened 2 years ago
1
h5py 3 requires mode argument

#58 rekado opened 2 years ago
0
ValueError when converting hic file to cool file

#57 jinkang1234 opened 2 years ago
1
Encoding problem while converting a Juicer matrix?

#56 chorzow opened 2 years ago
6
Multiprocessing Error

#55 aakashsur opened 3 years ago
1
hic2cool command not found on zsh

#54 rahmas36 closed 1 year ago
3
Minor typo maybe?

#53 pkerpedjiev opened 4 years ago
0
Calling Cooler.pixels raises KeyError: 'nnz' if multiple processes specified in hic2cool convert

#52 nefclan opened 4 years ago
2
hic2cool conda version

#51 joachimwolff closed 4 years ago
6
partial fix for zlib decompression issue

#50 SooLee closed 4 years ago
0
zlib.error when converting hic to cool

#49 dejunlin opened 4 years ago
3
Dep

#48 SooLee closed 4 years ago
1
Versions

#47 SooLee closed 4 years ago
0
Update requirements to allow newer versions

#46 paulmenzel closed 4 years ago
5
Error -3 while decompressing data

#45 chenggang108 closed 4 years ago
7
Drop setup_requires

#44 marcelm opened 4 years ago
8
Dev2

#43 SooLee closed 4 years ago
1
faster conversion?

#42 fanc-WU closed 4 years ago
3
Hic2cool convert error

#41 Captaincapture opened 4 years ago
2
juicer hic (fragment level matrix) convert into cooler

#40 Linhua-Sun closed 4 years ago
2
Error in converting .hic to .cool

#39 rahmas36 closed 5 years ago
1
hic2cool convert error with Juicer hic file

#38 wyim-pgl closed 4 years ago
3
ability to convert selected chromosomes

#37 rikrdo89 opened 5 years ago
1
Pin pandas version for py2 and add some readme stuff

#36 carlvitzthum closed 5 years ago
0
Installation problem

#35 francicco closed 5 years ago
5
Preserve chromosome names from hic

#34 carlvitzthum closed 5 years ago
2
0.7.2

#33 carlvitzthum closed 5 years ago
0
wrong chromosome names appear in warning messages

#32 balwierz closed 5 years ago
1
0.7.1

#31 carlvitzthum closed 5 years ago
0
0.6.1 fix for hic2cool update

#30 carlvitzthum closed 5 years ago
0
hic2cool update

#29 imerelli closed 5 years ago
4
Schema version

#28 carlvitzthum closed 5 years ago
0
cool required attributes not found in hic files converted to cool files

#27 koustav-pal closed 5 years ago
11
Balancing weight inversion, or not

#26 Phlya closed 5 years ago
1
0.5.1

#25 carlvitzthum closed 5 years ago
0
pip version broken

#24 joachimwolff closed 5 years ago
7
0.5.0

#23 carlvitzthum closed 5 years ago
0
how to output normalization counts?

#22 zhixuqiu closed 5 years ago
5