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I was trying to use Load10X_Spatial() to import a spatial data. The data was prepared in a standard manner as a h5 file and a "spatial" folder.
The folder contains
[1] "aligned_fiducials.jpg" …
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Hi!
Recently I am experiencing issues trying to simply download the data . I would like to use the main "organ" or "tissue_general" as I have seen it labelled in the website as my query filter.
…
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Hello, Developer,
I encountered an issue while trying to save my integrated data as an h5ad file. Interestingly, I can save it as an h5ms file without any problems. Could you please explain why thi…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Operating system
- [ ] Linux
- [X] Mac
- [ ] Windows
### Operating system version
- Mac OS Versi…
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Please forgive the long-ish data frame required for this reprex, I haven't yet figured out what aspect of this data triggers the error.
``` r
library(gtsummary)
library(gtreg)
packageVersion…
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## Context
Curators currently use [squidpy.read.visium](https://squidpy.readthedocs.io/en/latest/api/squidpy.read.visium.html#squidpy-read-visium) as a starting point to create an anndata from spac…
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Hi!
I am currently using the --ref-ld-chr-cts option to perform S-LDSC analysis, and I have a few questions:
1. The output of my analysis only includes the columns Name, Coefficient, Coefficient_s…
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Biota was a previous system used for registering tissue sample objects. All its data now resides in a large spreadsheet with over 35000 entries. There is some overlap with data already in the Specify …
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The [popV crosswalk](https://github.com/hubmapconsortium/hra-workflows-runner/blob/main/crosswalking-tables/popv.csv#L88) lists `hepatocyte` as a cell type in the heart. However, they should only appe…
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Hi,
Congrats on the great work. I was wondering if the tissue and nuclear segmentation annotations were publicly available.
Thanks!
Best, Guillaume