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Dear Olga,
I have now tried different parameters on my dataset. I started with a chromosome-level assembly built from linkage map. The default parameters severely degraded this assembly, which alr…
melop updated
4 years ago
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### Ask away!
Hi,
I am using the wf-pore-c pipeline to analyze my PoreC data, the final goal is to create a chromosome-level assembly of Salmon fish. We can now run the wf in our SLURM cluster and…
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Hi,
I have a haplotype resolved assembly done with hifiasm (HI-C) and Hifi data for a plant genome. I would like to use the 3d-DNA pipeline for the scaffolding and produce a haplotype-resolved fina…
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Please enter any comments you have on the revised version of the FOF-CT on ReadTheDoc (https://fish-omics-format.readthedocs.io/en/update_docs_caterina_rahi/index.html#)
as a comment on this issue.
…
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Hi ,
I ran 3d-dna for a plant genome with the command:
sh 3d-dna/run-asm-pipeline.sh 9201_Genome_Scaffold.fasta merged_nodups.txt
I got error infomation as follows:
awk: 3d-dna-master/util…
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Dear 3D-DNA users,
I used 3D-DNA to assemble a plant genome. the initial genome size was 1.6G, after using 3D-DNA pipeline it became 1.4G. I want to know why this happened and where is the 0.3G data?…
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We assembled the genome if the same species using Hifi and ONT data, respectively, and both using Hic data to assist assembly.
We find that there was some big rearrangement between the two genomes. F…
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Hi,
It would be interesting to see a comparison between these two.
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hello my friends
when adjuest the juicerbox, geneated the review.assembly . and use the run-asm-pipeline-post-review.sh to genearate the final fasta ,but its error. my genome size was 23g, and the fi…