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Can you please provide instructions on how to download PDB and Alpafold data for each release? I will then document the process in our data downloads file.
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In some of my predicted structures created from AlphaFold 3, PyMOL shows colors such as purple or green. Is it meant to be there, or is this an error of some sort?
Attaching an image to show an exa…
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Document how we select and display 3D structures so that UniProt can provide us with the correct PDB and AlphaFold xrefs for 2.7.
1. Select 3D structures as in selection criteria: See #1517
2. Alw…
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I have AlphaFold-2.0.0-foss-2020b.eb in our custom easyconfig tree (/hpc2n/eb/custom/easyconfigs/a/AlphaFold/) and when trying to build it can't find the OpenMM-%(version)s_AlphaFold.patch
These ar…
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Hello,
once I obtain the new clustered msa with your code, I am facing problems when trying to get alphafold to use it. I am locally running the one from github: https://github.com/deepmind/alphafold…
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Hello,
I have installed local ColabFold on my local machine and want to generate a structure using a PDB template. I used the following command:
```
$ colabfold_batch --template --amber --rando…
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* link to support ticket: [#2024012960000591](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=145581)
* website: https://colab.research.google.com/github/sokrypton/ColabDesign…
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Some links in the documentation lead to pages that don't exist. Right now the ones I have been able to locate are:
alphafold.md:
[localhost](https://github.com/hpcugent/vsc_user_docs/blob/1da87a6e…