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Can present STAR outputs from this pipeline support "psichomics" package for **Alternative splicing**?
Additionally there is a new bioconductor package IsoformSwitchAnalyzeR, but it uses outputs o…
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Hi,
Recently I'm trying to use EVM to annotate my genome. Since I'm a freshman for gene structure annotation, I didn't get any alternative splicing events from the final GFF. I searched for the manua…
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I need to understand the rmats analysis , i am able to generate the output files, but i am little bit confused about the analysis.
Si i have a X gene
Here is the information
gene name : x
IJC…
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Hi, [Kallisto/BUSTools was recommended by Seurat](https://github.com/satijalab/seurat/issues/2813#event-3222404304) to perform RNA isoform/alternative splicing analysis. However, I didn't find the re…
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https://doi.org/10.1101/104869
> Advancements in sequencing technologies have highlighted the role of alternative splicing (AS) in increasing transcriptome complexity. This role of AS, combined wit…
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Hello!
I use GRCh38 reference in my work. Could you provide Alternative Splicing Events annotations for this reference or tell how can I make it? I need annotations for Intron Retention.
Many than…
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Thanks for your tools! There are 2 sample groups with 3 BAM files per group,but I am counfused with the results, how to filter for differential alternative splicing between the experimental group and …
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one locus match two different transcripts of the same gene, how to interpret this?
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The codes below are quoted from the notebook.
```
sos run splicing_calling.ipynb psichomics \
--cwd psichomics_output/ \
--samples sample_fastq_bam_list\
--splicing_annotation hg38_su…