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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem description
I put one assembly inside another, but this is a cyclic dependency, however I cannot undo …
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem description
In assembly, to joint 2 objects we need 2 global coordinate systems that we can matc…
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I'm running **sbt clean backend/assembly** using **openjdk 17.0.11 2024-04-16 LTS** and it fails with:
```[error] 2 error(s) were encountered during the merge:
[error] java.lang.RuntimeException:
…
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Hello,
I am trying to run Donut Falls with the Unicycler assembler for some ONT and Illumina reads.
I am using the following run command:
`/Shared/SHL-BUG/software/nextflow/nextflow run UPHL-Bio…
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- Included items photo, upper right, between battery connectors and white 4 pin connector, item is unidentifiable and does not seem to be included or used.
- Do the 2 pairs of inboard pins for the 40…
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Hello, I keep having this error when I try to run the pipeline:
```
Traceback (most recent call last):
File "/home/miniconda3/envs/viper/bin/viper_cluster.py", line 21, in
from viper_clus…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem description
Segfault when using Parallel constraint of the new Assembly (segfaults are happening…
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Hi, I user Shasta v0.11.1 to assemble a R10.4 dataset, the N50 of the assembly is only 3.4M, is this right? The dataset was download from s3://ont-open-data/giab_2023.05/analysis/hg002/sup/PAO83395.pa…
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Given trycycler is designed to be run manually, nextflowing it has been a bit tricky. We need to ensure all newly generated files are captured in specified output directories. Trycycler just adds file…
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I have a homozygous genome. so it is suggested to run the assembly with -l0. When i run the assembly with purging as 0 the N50 value is 15mb. but whwn i run the assembly with purging as 2 , the N50 va…