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BGee ingest is one of our longer to run ingests. Moving this to a modular ingest should improve the overall build of the KG because it can be done asynchronously before the build of the new graph.
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Talking to @fbastian
- They have an RDF dump and also JSON but it may be fine to keep using TSV although we may need to switch to their H5AD
- they have someone actively working on improving th…
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Using Project Infinity and got the error below from maybe a typo in the setup file:
//[E:…
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We used to include a TSV of all anatomical homologies. This is useful for users and also for us (e.g. to coordinate with Bgee if we plan to obsolete a term that may be in the table)
This used to be…
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Field sex contains several times female for Bgee datasets
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Greetings, @WillScarlettOhara!
Last year I updated the BGEE Denoised Areas, but it's for EET only. Not compatible with BGEE. I recommend hosting this as a separate repository on your GitHub. I r…
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based on https://www.gibberlings3.net/forums/topic/31281-cahirs-eet-epic-run-mod-order-help-request/
there are many components covered by BGEE v2.5
BG1 Unfinished Business
0: Ice Island Level T…
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We made a mistake in labeling late/middle/aged stages. In our ontologies, we have:
```
late adult stage
middle aged stage
aged stage (mapped to UBERON:0007222 late adult stage)
```
But UBE…
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In GitLab by @vrechdelaval on Mar 21, 2016, 16:35
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In GitLab by @fbastian on Jan 22, 2018, 16:23
We need to prepare Bgee for release 14.0 (or .1?). Things that come to my mind:
* Extensive testing
* ~~put somewhere some "archive" links?~~
* ~~re…