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[HUMAnN 3](https://huttenhower.sph.harvard.edu/humann/) provides functional predictions for metagenome profiles. An importer to `MAE` or `altExp` in *mia* would be useful as this is a common format.
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root@634f60c5aa0a:/data# biobakery_workflows wmgx --input S10 --output S10_OUTPUT
(Nov 13 06:45:17) [ 0/44 - 0.00%] **Ready ** Task 0: kneaddata____D1-1_combined_R1
(Nov 13 06:45:17) [ 0/44 - …
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data_manager_metaphlan2 tries to locate: biobakery-metaphlan2-c43e40a443ed/db_v20
in the downloaded: https://bitbucket.org/biobakery/metaphlan2/get/2.6.0.tar.gz
That does not exist in the download…
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e.g., https://bitbucket.org/biobakery/biobakery/wiki/Home
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Add/Evaluate MelonnPan for the CAP
https://bitbucket.org/biobakery/biobakery/wiki/melonnpan
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Dear developer(s),
I am new to the biobakery VM images and currently I am going through the biobakery_workflows tutorials following:
https://github.com/biobakery/biobakery/wiki/biobakery_workflo…
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Hello:
I am trying to install biobakery workflos databases but y receive this error, despite I have istalled leveldb by "pip install leveldb"
``$ biobakery_workflows_databases --install wmgx_dem…
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Please go to the biobakery forum: https://forum.biobakery.org/c/downstream-analysis-and-statistics/sparsedossa/
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Humann seems to have moved from bitbucket to GitHub so
wget https://bitbucket.org/biobakery/humann2/raw/d1ac153083d48a5384e3b3d3597b9e36b1a4606e/humann2/data/misc/map_infogo1000_uniref50.txt.gz
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Hello,
I recently came across your tool and wanted to give it a try. I've successfully installed `biobakery_workflows` using conda via the conda command: `conda install -c biobakery biobakery_workf…