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As reported https://github.com/IDR/idr-metadata/issues/696#issuecomment-2188560610
- Image:38517 & Image:40053 - 5th & 7th plates of idr0008 (58 plates)
Viewing in webclient: `message = Error inst…
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**In Short**
Zeiss Scanners produce multi-scene images and while BioFormats can read these files, they cannot be viewed together in a 'Whole Slide' view which is acceptable to pathologists. Attempts…
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Hello,
I am trying to open .sdt files that contain my FLIM data, obtained from a becker & hickl FLIM instrument. However, I am getting the following error messages:
Does this mean that FL…
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idr0001 has 192 x 96-Well Plates, 6 acquisitions each.
1 Plate converted [below](https://github.com/IDR/idr-metadata/issues/683#issuecomment-1886903270) is 47 GB.
Approx 4.5 TB in total.
bioformats…
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Hello,
Original post: https://forum.image.sc/t/pyramidometiffwriter-really-bad-performance-when-closing-the-writer/95294
There is a (very big) performance issue when saving an OME TIFF file wit…
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Looks like bioformats is finding the actual channel names for a file that it wasn't before thereby messing with a tests expectation.
[See here](https://github.com/bioio-devs/bioio-bioformats/action…
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1) I'm interested in loading .oir files using your BioformatsReader. OME Bioformats added support for Olympus's .oir files with version 5.5. By upgrading the loci_tools.jar file that Pims uses, I wa…
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## Installation error
Thank you for this fabulous program!
I tried to install punctatools on my windows using wls2 ubuntu 22.04, macOs 13 and my GPU machine running Centos 7, all failed during ins…
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### Description:
Since BioFormats installation in Python is not straightforward, allow using alternative readers and use BioFormats only if nothing else works. Alternative readers are:
- https://g…
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Pims cannot download `loci_tools.jar` when using bioformat, it seems it does not exist since version version 6.9 of bioformat:
(see https://downloads.openmicroscopy.org/bio-formats/6.9.0/artifacts/ )…