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This model is a fixed PS envelope, with this functional form and constant values.
The phases are sampled uniformly.
The constants were fit to agree with explicit water from MD simulations. These…
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Dear devs,
I'm thinking about getting a JSbin pro account (currently working with JSfiddle). It has some benefits, but there is one weird thing that doesn't seem to work in the preview window of JS…
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= Description =
- Provide metabolic engineering tools in !BioPreDyn API.
= Context =
- !BioPreDyn mainly deals about manipulating biological models and simulations through the Simulation Experiment D…
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It's always bothered me that the `record_full_arg` output has 2 nodes that are only identifiable as grouped together because they are at the same time (unique in the nonWF case, but not necessarily in…
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Software Bazaar submission:
- Who will be present at the Software Bazaar?
Ben Haller (Cornell University)
- A link to a code repository, including an open source license.
https://github.com/Me…
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I'd love to learn how to do simulations in Julia. It seems to me that there could be two simple examples to start with:
- how to do a permutation test
- how to perform a simple stochastic simulation
…
aammd updated
9 years ago
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The OBI uses the concept of value specifications (obo:OBI_0001933) to model data estimations, simulations, targets and settings. Currently, there are classes representing specifications for categorica…
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### **Glycolysis**
- **Accuracy**: The model correctly represents glycolysis occurring in the cytoplasm, where each glucose molecule is converted into two pyruvate molecules, yielding a net gain of…
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Hi @gtonkinhill, thanks for the really detailed analyses. This looks like it took a lot of time to put together, and I genuinely appreciate the public release on Github. I have two concerns and some q…
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@mastrof, maybe we can discuss what you commented in this post: https://github.com/JuliaDynamics/Agents.jl/issues/884#issuecomment-1732556853