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I have tried to install panaroo on an HPC cluster using conda as well as manually. I have python 3.9 loaded into my environment. However, no matter how I install it, when I try to use panaroo it gives…
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see [biopython](https://github.com/Meiye-lj/Dockerfiles/tree/master/biopython)
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Tarea realacionada con el paquete de Biopython, una librería que recoge una serie de aplicaciones y programas informáticos pensados para cuantificar y hacer cálculos con datos biológicos
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### Setup
Referencing Biopython docs in a Sphinx project:
```
intersphinx_mapping = {
'Bio': ('https://biopython.org/docs/latest/api/', None),
}
```
### Expected behaviour
This was…
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When I was at Waterloo, I moved my code from BioPython to [scikit-bio](https://scikit.bio). I found it much more performant because it uses C-based data structures like Numpy under the hood (the same …
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I encountered the error:
`ImportError: Bio.Alphabet has been removed from Biopython. In many cases, the alphabet can simply be ignored and removed from scripts. In a few cases, you may need to specif…
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As a premise I have a very poor background in informatic and bioinformatic.
However for my current research I wanted to test digIS which could satisfiy perfectly my needs.
I was running a genome…
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Seen a few times, biopython reaches the 100s causing failure.
https://ci.appveyor.com/project/jayvdb/pypidb/builds/32020294?fullLog=true
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.Hi, I am facing this error and i followed below instruction also but still unable to solve it.
**/TnComp_finder.py**
./TnComp_finder.py:247: SyntaxWarning: "is" with a literal. Did you mean "=="?
…
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Hello,
1.
The Biopython version has to be fixed at 1.81 in webapp.yaml
`from Bio.SeqUtils import GC which is a function deprecated in Biopython 1.80 and removed in Biopython 1.82.`
2.
"0.0.0.…