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metagenlab
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zDB
zDB: comparative bacterial genomics made easy
MIT License
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Fix Pfam identifiers
#105
njohner
closed
19 hours ago
0
Add button to blast protein sequence in the locus overview.
#104
njohner
closed
20 hours ago
0
Integrate link to paper blast in the locus overview.
#103
njohner
closed
20 hours ago
0
Fix product representation in GWAS view for orthogroups.
#102
njohner
closed
21 hours ago
0
Fix Scoary-2 integration.
#101
njohner
closed
23 hours ago
0
Fix typo in accumulation rarefaction plot metadata.
#100
njohner
closed
1 day ago
0
Fix various views for cases where there are no gene annotations.
#99
njohner
closed
1 day ago
0
checkm analysis
#98
sjparkmk
closed
1 day ago
1
Some PFAM identifiers are not displayed correctly
#97
tpillone
closed
19 hours ago
0
KeyError at /search_bar 'name'
#96
tpillone
closed
19 hours ago
1
wrong tblastn databases
#95
tpillone
opened
5 days ago
0
Swissprot best hit phylogeny
#94
TKlamydionaut
opened
1 week ago
0
Correctly handle group_0 in EntryIdParser.
#93
njohner
closed
2 weeks ago
0
Add button to draw custom phylogeny from selection of entries in various tables.
#92
njohner
closed
2 weeks ago
0
Conda env issues
#91
rubenluz
opened
2 weeks ago
2
Improve table layouts for venn and contigs views.
#90
njohner
closed
2 weeks ago
0
Add buttons to download protein and DNA sequences in homologs tables.
#89
njohner
closed
2 weeks ago
0
Control data exports from tables by making rows selectable.
#88
njohner
closed
2 weeks ago
0
Fix webapp conda environment for macOS.
#87
njohner
closed
3 weeks ago
0
Add views to add, delete, and display groups.
#86
njohner
closed
1 month ago
0
Handle groups when selecting genomes wherever pertinent.
#85
njohner
closed
2 months ago
0
Handle groups in hit extraction view.
#84
njohner
closed
2 months ago
0
Display form validation errors next to the corresponding fields.
#83
njohner
closed
2 months ago
0
Allow defining groups of genomes in input file.
#82
njohner
closed
2 months ago
0
Fix bug in ValueColoredColumn.
#81
njohner
closed
2 months ago
0
Fix home view for DBs with missing optional annotations.
#80
njohner
closed
2 months ago
0
Add command line variables for filtering VFs to bin/zdb.
#79
njohner
closed
2 months ago
0
Add view to produce custom plots (phylogenetic trees and table).
#78
njohner
closed
2 months ago
0
Filter VF hits by SeqID and coverage and keep one hit per locus.
#77
njohner
closed
2 months ago
0
Fix icons in comparison index views.
#76
njohner
closed
2 months ago
0
Consistently use metadata objects in various views.
#75
njohner
closed
2 months ago
0
Scoary missing from the docker/singularity containers
#74
bkm
opened
3 months ago
1
Add AMRs and VFs to search index.
#73
njohner
closed
2 months ago
0
Speedup VF query
#72
njohner
closed
3 months ago
0
Add VFs to locus and orthogroup views.
#71
njohner
closed
3 months ago
0
Improve some results descriptions and cosmetic changes
#70
njohner
closed
3 months ago
2
Update annotation pipeline tests for VFs.
#69
njohner
closed
3 months ago
0
Add phylogenetic representation of GWAS results
#68
njohner
closed
3 months ago
0
Add specific form for GWAS analysis.
#67
njohner
closed
3 months ago
0
Bug fixes and more error handling in various views.
#66
njohner
closed
4 months ago
0
Fix blast against the VFDB.
#65
njohner
closed
4 months ago
0
Fix blast view
#64
njohner
closed
4 months ago
0
Small bug fixes for comparison index and hit extraction views.
#63
njohner
closed
4 months ago
0
Add GWAS analyses using Scoary2
#62
njohner
closed
4 months ago
0
Cleanup html templates
#61
njohner
closed
4 months ago
0
Port remaining analysis views to class-based and introduce analysis metadata classes
#60
njohner
closed
4 months ago
0
Webapp bug fixes and view improvements.
#59
njohner
closed
4 months ago
0
Add all the standard views for the virulence factors
#58
njohner
closed
4 months ago
0
Various small bug fixes
#57
njohner
closed
4 months ago
0
Add virulence factor annotations.
#56
njohner
closed
4 months ago
0
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