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Identified issues the "Proteomic Standard Initiative (PSI) Controlled Vocabularies (CV)" resolving at Ontobee. See below example and corresponding references.
**PSI-MS CV Resolve Issue Example**
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Current Freeware tools provided by Bruker Daltonics such as CompassXport are command line based and designed for the Microsoft Windows operating system only. I also haven't managed to get them up and …
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Dear Karsten Wüllems,
I’m a Ph.D student in France on Brassica napus (rapeseed) specialized metabolites against pathogens. I want to apply your pipeline “Analysis of GRaph mapped Image data NEtwor…
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Hi,
could you please add the following entries to the controlled vocabulary for ReDU:
SampleExtractionMethod:
1. boiling 80% EtOH
2. Folch
ChromatographyAndPhase:
1. reverse phase (C30)
2.…
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if the scan polarity ends up being "n/a", the file cannot be written?
```mzml2isa -i /net/isilonP/public/rw/homes/tc_cm01/metabolights/prod/studies/stage/private/MTBLS176/ -o . -s MTBLS176
inpu…
khaug updated
7 years ago
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Apparently, I can't merge MS2 precursors of same IM and m/z without losing the IM Information.
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Hello,
I'm encountering a possible memory-related issue when running Fragpipe on an SGE cluster (dockerized Linux version of Fragpipe). Interestingly, when I run the exact same Docker container on …
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**- Upload your log file**
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the…
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Hi,
I'm sorry if I missed info on how to get around this issue, but I can't seem to figure out how to use fragpipe in a conda env offline. I have installed fragpipe as a conda env on our cluster an…
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Hi dear developer,
## Basic information
Our laboratory works on the specified metabolites involved in the ecological interactions of crops in the Brassicaceae family (Within this group, we c…