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cancer cells classic-like should be cancer classical cells according to the PDAC consensus classification (basal-like and classical).
"bulk references" could be confusing. Suggestion instead: cell-ty…
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**CL term**
glandular cell of endometrium
http://purl.obolibrary.org/obo/CL_0002656
**Suggested replacement**
epithelial cell of endometrial gland
http://purl.obolibrary.org/obo/CL_0009084
…
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This is a great tool! Thank you for development. Can you please generate/provide similar T subset resources for mouse datasets? It will be greatly useful as many labs including ours generate CITE-seq …
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It seems that the websheet dataset used in the Cell Type Classification cannot be accessed. Could you also share the dataset?
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The following is a summary of potential improvements/features for the classification model
[Experiment Plan](https://docs.google.com/spreadsheets/d/1bj_t5tNHluGJoujQYqk08CEP_8t5uI1prBFmbS3YyNc/edit…
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If it is a grouping class:
- Is It needed?
- Is classification under it complete?
- Is classification under it sustainable. Can we realistically populate classes - ideally with inferred classificatio…
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@dosumis = I think no - most biologists would not group in this way - perhaps apart from some evo-devo folks studying the ancient evolutionary transitions (diploblast to triploblast?). Practically -…
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rdfs:label "glandular epithelial cell"
definition "A specialized epithelial cell that is capable of synthesizing and secreting certain biomolecules."
SubClassOf:
- 'epithelial cell'
- 'part of' so…
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### Description of feature
The following methods look interesting:
```[tasklist]
### Tasks
- [ ] https://github.com/nf-core/scdownstream/issues/21
- [ ] https://github.com/nf-core/scdownstream/issue…
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First of all, thank you for developing this impressive toolkit. Much appreciated!
I encountered a problem when using scPoli for cell-type annotation. When I first trained the model on my reference …