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Stack trace below, for both Cython 3 and 0.29.37
Cython3
```
pip install python-javabridge
Collecting python-javabridge
Using cached python-javabridge-4.0.3.tar.gz (1.3 MB)
Preparing m…
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Hi,
I get the following error message when running the SMO plugin in CellProfiler:
`Worker 2: Running module SMO 7
Worker 2: run_image_set_exception, get_always_continue False
Worker 2: Error d…
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The current environment_cp.yml didn't work for me. First problem was that omero-py and wxpython couldn't be installed, some version conflicts. So I created an empty env and installed omero-py and wxpy…
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might be nice to read in hdf5-files (= no need to store CSVs anymore)
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In a recent meeting, the team discussed a followup analysis for interrogating the signature features. We have already performed at least one feature analysis that defines all of the bz signature featu…
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```
Error while processing RunCellpose:
(Worker) FileNotFoundError [Errno 2]
No such file or directory: '/Users/eweisbar/Documents/CPoutput/.cellprofiler_temp/c564a507-17e5-4256-837d-6e1d59892524…
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### Package name
cellprofiler
### Package version
Newest
### Package website
https://github.com/CellProfiler/CellProfiler
### Package availability
https://pypi.org/project/CellProfiler/
### Ad…
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OS: [Windows 11 Enterprise]
CellProfiler Version [4.2.7]
conda environment cellpose plugin with python3.10
git clone https://github.com/CellProfiler/CellProfiler-plugins.git
Set the plugins path i…
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Hello, I tried to use the script to analyse figures on omero with cellprofiler using the pythonAPI. However, it is written that the pipleine accept only images with 2 channels, but my images have 4. D…
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Having issues with Classify Objects module. When in hidden mode, the analysis runs fine. When one view mode the following error message comes up;
> "Error while processing ClassifyObjects:
boolean…