broadinstitute profiling-resistance-mechanisms issues

broadinstitute / profiling-resistance-mechanisms

Predicting pharmacodynamic responses to cancer drugs using cell morphology

BSD 3-Clause "New" or "Revised" License

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issues

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Image dsplay on the landing page are broken

#134 braymp opened 11 months ago
0
Make clone labels consistent

#133 gwaybio closed 1 year ago
0
[Response to Reviewers] Replace "all except bz" features with "random" features

#132 gwaybio closed 1 year ago
0
[Response to Reviewers] add signature summary visualization

#131 gwaybio closed 1 year ago
0
[Response to Reviewers] Adding analysis and visualization of misclassified samples

#130 gwaybio closed 1 year ago
0
[Response to Reviewers] Make feature space consistent size with PCA and plot multiple metrics

#129 gwaybio closed 1 year ago
0
[Response to Reviewers] Add feature space analysis (UMAP and clustering)

#128 gwaybio closed 1 year ago
0
Investigate Bortezomib signature in the context of other proteasomal inhibitors

#127 shntnu opened 1 year ago
5
Create cpg_upload.sh

#126 shntnu closed 1 month ago
0
Adding files relevant to figure generation

#125 mekelley closed 1 year ago
10
Add documentation to notebook that generates the feature volcanos

#124 gwaybio closed 1 year ago
1
Test git ability

#123 mekelley closed 1 year ago
1
Making our images publicly-available

#122 gwaybio closed 1 year ago
5
Update README.md

#121 yhan8 closed 2 years ago
1
fixed the heatmap library error in 7.profile-heatmaps.ipynb

#120 yhan8 closed 2 years ago
2
CellProfiler feature analysis

#119 gwaybio opened 3 years ago
29
Addressed Greg's additional comments and ready to merge to master branch

#118 yhan8 closed 3 years ago
0
Addressed Greg's Additional Technical Comments

#117 yhan8 closed 3 years ago
0
Enhancement of 3.resistance-signature/0.training-test-split.ipynb

#116 yhan8 opened 3 years ago
0
Efforts in installing R package of ComplexHeatmap

#115 yhan8 closed 3 years ago
6
Modified Greg's original scripts to process the new batch 24~27

#114 yhan8 closed 3 years ago
3
Add analysis pipelines from newer batches

#113 DavidStirling closed 3 years ago
0
Remaining analyses before writing the paper

#112 gwaybio opened 3 years ago
2
Delete old data and file

#111 gwaybio closed 3 years ago
0
Remove old folder

#110 gwaybio closed 3 years ago
0
Adding batch 24-27 processed data

#109 gwaybio closed 3 years ago
0
Update README.md

#108 shntnu closed 3 years ago
0
Audit new batch of data

#107 gwaybio closed 3 years ago
1
UMAP bug

#106 gwaybio closed 3 years ago
0
Add last four batches

#105 gwaybio closed 3 years ago
0
Apply bortezomib signature to other clones with different resistance status

#104 gwaybio closed 3 years ago
0
Adding threshold point to roc curve

#103 gwaybio closed 3 years ago
0
Add sorted profile heatmaps

#102 gwaybio closed 3 years ago
0
Updating profile correlation heatmap with complexheatmap

#101 gwaybio closed 3 years ago
0
Fixing platemap figures and observing platemap signature score impact

#100 gwaybio closed 3 years ago
0
Update ROC curve

#99 gwaybio closed 3 years ago
0
Bortezomib signature platemap effect?

#98 gwaybio closed 3 years ago
4
Adding batch 17, 18, 19 profiles

#97 gwaybio closed 3 years ago
0
Adding Batch 13 14 15

#96 gwaybio closed 3 years ago
0
Adding batch 12 and batch 13 data

#95 gwaybio closed 3 years ago
0
New bortezomib signature with new batches

#94 gwaybio closed 3 years ago
1
Adding batch 11 data

#93 gwaybio closed 3 years ago
1
Notes from Meeting 12/9/20

#92 shntnu opened 3 years ago
0
Combining plates in Batch 9 and 10

#91 gwaybio closed 4 years ago
2
Add notebook to visualize the extent of batch effect

#90 gwaybio closed 4 years ago
0
Batch 9 and 10 Data Summary

#89 gwaybio opened 4 years ago
0
Rerunning audit for batch 9 and 10 data

#88 gwaybio closed 4 years ago
0
Updating single cell profiling + adding cytominer-eval

#87 gwaybio closed 4 years ago
0
Bulk profile normalization strategy

#86 gwaybio closed 4 years ago
1
Adding Batch 9 and 10 profiles

#85 gwaybio closed 4 years ago
0