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In the `feature_hic_scaffolding` branch many processes are requesting >20 cpus when using the Uppmax profile. This causes an error and nextflow exits the pipeline.
This happened with FASTK_FASTK (r…
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Hi,
I’m using Hairsplitter on a large repetitive genome assembled with Flye, but I encountered the following error:
==== Now looping and iteratively modify the GFA until all reads align end-to-end…
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Hi, I found your project on Reddit and it looks great. But I can't get it to work:
```
12:09:15 /opt/crex (master|✔) ./build.sh
Setting Environment Variables
Building crex in Debug mode
C…
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I have edited settings.json to add crex as markets but running
`node scripts/sync.js market`
it says
`error: entry for crex does not exists in markets db.`
------------------------
settings…
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Hi, I'm running SQuIRE to quantify TEs on a non-UCSC genome and I managed to finish the mapping step, which seems fine. Next, I tried the Count command for one of my samples and I get the following er…
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Hi,
I'm trying to rerun OrthoFinder and I am running into an error when diamond is called to run all-versus-all. It returns error code 1 and I'm not sure what it means. Back in April it ran fine wi…
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I'm getting the following error and after this the job seems to be idling. it does not exit out and give me an error but instead keeps running without producing an output. the error is below -
> …
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## Anvio-8 (CHECK LAST COMMENT FOR BEST INSTALL)
Anvio is not available as a module on Rackham and has to be manually installed in ones `conda` environment. The steps to install Anvio was gathered fr…
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# Important update
Before trimming, we need to update the raw_samples.txt as it contains samples that are deemed hybrids that we will not include in this study.
_hybrid_samples.txt_
```
P14052…
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Hello!
Im trying to remove duplicate sequences using https://github.com/veg/hyphy-analyses/tree/master/remove-duplicates.
It all works well when I run it on the example files, or only on one of my…